Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0948 ATGGCTCCTGCCACCTCTAATGCGGCAGCTCAGAGGCTCGTTGGCTTCTGTCTCTGCACGCAGCCGCCGGGCCGGTCGCCGGTTCCGGCCTCTCGGCGGCCACAGAAGTACAAGCATTTGAACGAGATTATGGCAAAAGCTCCGTATGCTGTCATTGAGCGGGACGATTACAGTGACGTGACCTGTGAGCAATGCGGCTCTAGTGAACAACCGGAGGAGCTGATTCTGTGTGATAAATGCGATAAAGGTTTCCATATGAAATGCCTGAGACCCATTTTGGTCAGAATCCCGATTGGATCATGGCTTTGCCCTAAGTGTTCGGGAGAGAAGAGAGTAAAAAGTTTCTCTCAAAAGAAGATAATTGATTTTTTCGGGATTCAGAAGTGTAGTGATGTTAACGACAAATGTGCATCTCCTCAAGATGCTAAGAAACGTCGGAGACGTTCAAGATTGCTGGTATTGCAAAAGAAAAGGAGGAGATTATTTCCATATATTCCAACAGAAGATCCTGCCCAAAGACTGAAACAGATGGGTTCCCTTGCTTCTGCTTTAACAGCAATGCATATGGAGTTCAGTGATGATCTCACATATACGAATGGGATGGCTCCAAGATCAGCTAATCAAGCCATGTTTGAAAATGGTGGCATGCAGGTACTTTCCAGGGAAGACACGGAGACCTTGGAACATTGCAAAGCTATGTGTAGAAGGGGCAAATGCCCTCCCCTTATGGTTGTTTTTGATTCATGTGAAGGCTACACTGTAGAGGCAGATGGCTCAATTAAGGATATGACCGTCATTGCTGAATACACGGGTGATGTGGATTACATGAAGAACCGAGAACATGATGATTGTGACAGTATGATGACCCTTCTTTTAGCAACAGATTCTTCTAAAAGTCTAGTCATCTGCCCTGATAAACGTGGAAACATTGCTCGCTTTATTAATGGCATCAACAATCATACTCAGGAAGGTAGGAAGAAGCAGAATTGTAAATGTGTGAGGTACAATGTTAGTGGTGAATGCAGGGTCTTCTTGGTTGCTACTCGTGATATTACTAAGGGAGAAAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCACAATTTTGTTTGA 1125 0.4444 MAPATSNAAAQRLVGFCLCTQPPGRSPVPASRRPQKYKHLNEIMAKAPYAVIERDDYSDVTCEQCGSSEQPEELILCDKCDKGFHMKCLRPILVRIPIGSWLCPKCSGEKRVKSFSQKKIIDFFGIQKCSDVNDKCASPQDAKKRRRRSRLLVLQKKRRRLFPYIPTEDPAQRLKQMGSLASALTAMHMEFSDDLTYTNGMAPRSANQAMFENGGMQVLSREDTETLEHCKAMCRRGKCPPLMVVFDSCEGYTVEADGSIKDMTVIAEYTGDVDYMKNREHDDCDSMMTLLLATDSSKSLVICPDKRGNIARFINGINNHTQEGRKKQNCKCVRYNVSGECRVFLVATRDITKGERLYYDYNGYEHEYPTHNFV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0948 374 SUPERFAMILY SET domain 225 362 IPR046341 -
Bisa02g0948 374 SUPERFAMILY FYVE/PHD zinc finger 49 112 IPR011011 -
Bisa02g0948 374 CDD SET_ATXR5_6-like 237 374 - -
Bisa02g0948 374 Gene3D SET domain 145 374 IPR046341 -
Bisa02g0948 374 ProSiteProfiles SET domain profile. 240 362 IPR001214 GO:0005515
Bisa02g0948 374 SMART set_7 240 368 IPR001214 GO:0005515
Bisa02g0948 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 121 IPR013083 -
Bisa02g0948 374 SMART PHD_3 61 107 IPR001965 -
Bisa02g0948 374 FunFam Histone-lysine N-methyltransferase ATXR5 146 374 - -
Bisa02g0948 374 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 134 372 - -
Bisa02g0948 374 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Bisa02g0948 374 Pfam SET domain 140 362 IPR001214 GO:0005515
Bisa02g0948 374 CDD PHD_RSF1 62 106 - -
Bisa02g0948 374 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Bisa02g0948 374 Pfam PHD-finger 62 107 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0948 Bisa-ChrBisa02 15985193 15988366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0948 47 115 C2H2 Transcription Factor Family AT3G01460 37.143 9.49e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa02g0948 SET 1.5e-07 No_clan