Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0945 ATGCTTAGCTCTCATGAAGCAGACACTGAGATATTCTTCGACTCAGCGGATTTTTTGTCACCTCAACATTCTGTTTTATCCAAACAACAGTTCGGGTATGAAGTTTGGGTGAGTGAGCCTCGAAGTGTGAAGGAAAGACGAGAACGGTTTCTACAGGGAATGGGCTTAGCTGATACTTCTTCCATGGTTTGTTCTCGTGAGAATGACACACTTGAAAGGATAAGGGAGTGCGAAGGTGCTGTCTCAAGTGCCACCAGTTCGCCTAATGAAGCAAACTTCTTGTGTGATGAACATGAAGGTGTCAGTTCTGAAAGGAAGGTGTATGAGTGTGAGTTATCTTCCCCATGTGAAGAATACCGACAAAGAGAAGCCCATGCCCCAGAGGACCATGGTTGTTTTGATGTGGTAAAGAAGAGAGAGAAGATGTGGTGGAAGCGCCTTGTGAGATCAAAATTGAATGCAGCGACAAGTAAAACTCGAAGAACGAATGTGAAGCAGAACAGAAAGAGGTGGATGGATTTGAGTGCGTTGTATGTTGGACAAGAGATCAGAGCACACAAAGGGTTAATCTGGACCCTGAAGTTTAGTCCCAATGGGAACTATCTAGCAAGTGGAGGTGAAGACGGGGTGGTACGCGTGTGGCGTGTTATATCAATGGATACATCAAGCATTAGCTTCACTGCAGAAGACAGCTCATCACTGATTCGCAAAGTGAAAGAAGATATCTCCTGTTCCTGGAAGAAACAGTCAAAACAACCCTCCATTGTGCTTCCAAGCGAGGTTTTTCAAATAGAGGAATCTCCCCTGCAAGAATTCTATGGCCATACCAGTGATGTCTTGGATTTGGCTTGGTCTGATTCAGATATTCTACTTTCCTCTTCTATGGACAAAACTGTTCGCTTGTGGCAAATTGGTTGTAATCACTGTCTGAACGTTTTCCATCACAATGACTACGTGACTTGCATCCAAGTCCATCCAGCTGATAAAAATTACTTCATTAGTGGGGCTATAGATGGCAAAGTTCGAATATGGGGGATATCTGAAGAGCGAGTTGTTGACTGGGCAGATGTAAGAGATGTGATTACTGCTATAAGTTACCAGCCGGATGGGAAGGCTTTTGTTGTTGGTTCCATTACAGGCGCTTGTCGCTTTTATGTTGCCTCAGGCAAACATTTCCAGCTTGAGGCAGAGATATGGATTCGTGGAAAGAAGAAAACAGCTGGCAACAAGATCACTGGCATTCAGTTTTCCCAGAAAAAGCACCAGAGAGTTATGATCACATCAGAGGATTCCAAAGTTCGCATACTGGATGGCATTAAACTTGTCCAGAAATTCAGAGGTCTTCCAAAGTCAGGAAGCCAGATGTCTGGATCGTTTACATCAAGTGGAAAACATATAATCACAGTTGGAGATGACTCCCGTGTCTATATCTGGAACTTTGATGACACCAAAAATCCATCATCCAAACAGATAAAATCTGAGCGTTCCTGTGAATACTTCTTCGCAGAGGGTGTTACTGTTGCAGTACCTTGGTCAGGGACGAGTACGGAACAAAAGCGCTCTGGTAGTAGCAATATTGCACAATGTTCTTCAGAAATGGAACTCCATCATCACCTAGATGCTTCTCCGGCCCGAGCTAGAGATTCGGATCGTTTCTCTCTCGGTAACTGGTTCACCATGGATGGAACATGCCGGGGTTCTATGACATGGCCTGAGGAGAAACTTCCAAGTTGGGATTTACCTTTTGCAGAAGATGAATATGATCCCCAGAAGCTGCGTAACAAAGATGGTTGGCATGAAAGTGGTTTGTCAGAAACATGGGGACTATCCATAGTAGCAGCTAGTTTAGATGGAACAATCAAGACATTCCATAACTTTGGATTGCCTGTGAGGATTTAG 1899 0.4413 MLSSHEADTEIFFDSADFLSPQHSVLSKQQFGYEVWVSEPRSVKERRERFLQGMGLADTSSMVCSRENDTLERIRECEGAVSSATSSPNEANFLCDEHEGVSSERKVYECELSSPCEEYRQREAHAPEDHGCFDVVKKREKMWWKRLVRSKLNAATSKTRRTNVKQNRKRWMDLSALYVGQEIRAHKGLIWTLKFSPNGNYLASGGEDGVVRVWRVISMDTSSISFTAEDSSSLIRKVKEDISCSWKKQSKQPSIVLPSEVFQIEESPLQEFYGHTSDVLDLAWSDSDILLSSSMDKTVRLWQIGCNHCLNVFHHNDYVTCIQVHPADKNYFISGAIDGKVRIWGISEERVVDWADVRDVITAISYQPDGKAFVVGSITGACRFYVASGKHFQLEAEIWIRGKKKTAGNKITGIQFSQKKHQRVMITSEDSKVRILDGIKLVQKFRGLPKSGSQMSGSFTSSGKHIITVGDDSRVYIWNFDDTKNPSSKQIKSERSCEYFFAEGVTVAVPWSGTSTEQKRSGSSNIAQCSSEMELHHHLDASPARARDSDRFSLGNWFTMDGTCRGSMTWPEEKLPSWDLPFAEDEYDPQKLRNKDGWHESGLSETWGLSIVAASLDGTIKTFHNFGLPVRI 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0945 632 Pfam WD domain, G-beta repeat 267 302 IPR001680 GO:0005515
Bisa02g0945 632 Pfam WD domain, G-beta repeat 309 344 IPR001680 GO:0005515
Bisa02g0945 632 Pfam WD domain, G-beta repeat 182 214 IPR001680 GO:0005515
Bisa02g0945 632 SUPERFAMILY WD40 repeat-like 178 621 IPR036322 GO:0005515
Bisa02g0945 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 304 - -
Bisa02g0945 632 Gene3D - 170 507 IPR015943 GO:0005515
Bisa02g0945 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 216 - -
Bisa02g0945 632 FunFam WD repeat-containing protein 44 167 511 - -
Bisa02g0945 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 304 IPR001680 GO:0005515
Bisa02g0945 632 PANTHER WD REPEAT DOMAIN 44 151 629 IPR040324 -
Bisa02g0945 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Bisa02g0945 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 488 IPR001680 GO:0005515
Bisa02g0945 632 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Bisa02g0945 632 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Bisa02g0945 632 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Bisa02g0945 632 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 347 - -
Bisa02g0945 632 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 354 IPR001680 GO:0005515
Bisa02g0945 632 SMART WD40_4 438 479 IPR001680 GO:0005515
Bisa02g0945 632 SMART WD40_4 265 303 IPR001680 GO:0005515
Bisa02g0945 632 SMART WD40_4 306 345 IPR001680 GO:0005515
Bisa02g0945 632 SMART WD40_4 347 386 IPR001680 GO:0005515
Bisa02g0945 632 SMART WD40_4 393 437 IPR001680 GO:0005515
Bisa02g0945 632 SMART WD40_4 176 215 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0945 Bisa-ChrBisa02 15962196 15964646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0945 269 476 U-box Gene Family AT2G33340 26.786 8.55e-11 62.8