Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0944 ATGGTGAGGGATGATCTATATATCACAGTTCCGAGCTTCTTCAGGTGTCCGATATCGCTGGACGTTATGAAATCCCCCGTCAGCCTCTGCACCGGCGTTACCTACGACCGTTCTAGCATCCAAAAATGGCTCGACAACGGCAACAACACCTGCCCCGCCACCATGCAGGTGCTTCCAACCAAGGAGTTTGTTCCTAACCACACTTTACAGAGGCTTATCCAGATCTGGACTAACTCGGTTCGGCACCGACTCGAATCTACCGAGTCGCCGGTTGCCAAATCGGTCCCTTCTCAGGACCGGGTCGTCGAGGCTGTTAGACTCATGGAAAGCCAGAGCGAGAGCCGATTCGATTCGCTCGCCGATATTCTGTGCTTTGCCGAAGAATCTGACAAAAACCGGGAATTCCTTGCCAAAATAGAAGGCTTCGTGCCCTTGCTCGTTGGCTTCCTCGACAATGTCGATGGTGGAATTGCCGGGAGAGTTGAATTTTTTGAAAAAGTTGTTAGGGCTTTGGATTTGGTTCTAGATAAAATCGAAGATCACGAGCCATTGAAAAATTCGATGTTGAGGAGCCAGCAAGGCAATTGCTTAACTTCTCTGCTTCTTGTTCTGCAACAAGGCAGCTCCGAGTCGAGAATCGCATCGGCCAAGATTTTGAAATCCGTAGCTGCGGACGTTGAATCGAAACTCCTGATCGCCGAGAAGGAAGGCCTAATATCTGAATTGCTTAAACTAATCACACCAGACAAAGATGTGGCGGTAATCGAGAACGGCCTATTCTGCTTGATTGCAATCTCAACGCCGAAACGAAACAAGATGAAATTAGTCAATCTCGGAGCTGTGAAGACGTTAACGGATTTGCTCTCGGAGTCGAAGTGGAGCGTTTCCGTCACCGAGAAGGTACTGAAGCTGCTCGAAACGGTGTCGTCGACGAAGGAAGGGAGGTCGGAGATTTGCGAGGACCCGAATTGCGTGGCAGCGACATTGCAGAAGGTGCTGAAAGTATCGAGCGCGGCGACGGAGCACGCCGTGACGTTGCTGTGGAGCGTGTGTTATCTATTTCGTGATCAGAAGGCGCAGGAGGCGGTGACGAAGGCGAACGGTTTGACCAAGATTCTGCTTCTGATGCAGAGTAATTGTTCGCCGGCGGTTCGACAAATGTGCGCCGATTTGCTCAAGATTTTCCGGGTTAACTCGAAATCGTGCCTTTCTTGTTACCACACTAAGACCACTCATATCATGCCCTTTTGA 1251 0.5028 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLPTKEFVPNHTLQRLIQIWTNSVRHRLESTESPVAKSVPSQDRVVEAVRLMESQSESRFDSLADILCFAEESDKNREFLAKIEGFVPLLVGFLDNVDGGIAGRVEFFEKVVRALDLVLDKIEDHEPLKNSMLRSQQGNCLTSLLLVLQQGSSESRIASAKILKSVAADVESKLLIAEKEGLISELLKLITPDKDVAVIENGLFCLIAISTPKRNKMKLVNLGAVKTLTDLLSESKWSVSVTEKVLKLLETVSSTKEGRSEICEDPNCVAATLQKVLKVSSAATEHAVTLLWSVCYLFRDQKAQEAVTKANGLTKILLLMQSNCSPAVRQMCADLLKIFRVNSKSCLSCYHTKTTHIMPF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0944 416 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Bisa02g0944 416 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Bisa02g0944 416 SUPERFAMILY RING/U-box 5 79 - -
Bisa02g0944 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 92 IPR013083 -
Bisa02g0944 416 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Bisa02g0944 416 CDD RING-Ubox_PUB 11 63 IPR045210 -
Bisa02g0944 416 PANTHER WDSAM1 PROTEIN 9 404 IPR045185 GO:0061630
Bisa02g0944 416 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Bisa02g0944 416 Gene3D - 93 405 IPR011989 -
Bisa02g0944 416 SUPERFAMILY ARM repeat 111 396 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0944 Bisa-ChrBisa02 15896511 15897761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0944 1 416 U-box Gene Family AT5G64660 54.353 1.33e-147 424