Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0938 ATGTATGCTTCTTCTTCCAGTGCACTACTCTTCCACGATCTTCTTGGGGACTTCCAGTTCCACTCCAGAAGATTGCTCCTTTTTCACAACCCACTAAACTCAGCCAACCCTCCACCTTCCTTAACCACCCACAATTCAACACAGTCCTATCCGGGGGACAGCAATTTCGACACCAACGTTGTCATGGTACTCTCTGTTCTACTCTGTGCTCTCATCTGCTCTCTGGGCTTGAACTCCATCGTAAGGTGTGCCTGGAGGTGTTCCAATTTAGGGGTCAACAGTACTGAATCAGCAGGAGGGTCAGTTCCTCCTGCAAGGTTGGCCAACACAGGAGTGAAGAAGAAGGCCTTGAAGACCTTTCCCACAGTGAGCTACTCTGCTGAGCTGAAACTCCCAGGCCTGGACACTGAGTGTGTGATATGCTTGTCGGACTTCGCCAATGGTGATCGCCTTCGCATTTTGCCCAAGTGTAACCATGGCTTCCACGTTCGCTGCATTGACAAGTGGCTAACTTCACATTCATCTTGCCCTAAGTGCAGACACTGCCTCATTCACACCTGTGAAAAAATTGTCGGCTGCACCGCCCAGCCTAGCTCCTCTCAGCCCCTCCATGAAACCATTCTAAGCATTGCTCCCTTACAACCAGAAGCTCTGGTTCGTAGCTACAGAGAAGTTAGCAGCTGA 684 0.5044 MYASSSSALLFHDLLGDFQFHSRRLLLFHNPLNSANPPPSLTTHNSTQSYPGDSNFDTNVVMVLSVLLCALICSLGLNSIVRCAWRCSNLGVNSTESAGGSVPPARLANTGVKKKALKTFPTVSYSAELKLPGLDTECVICLSDFANGDRLRILPKCNHGFHVRCIDKWLTSHSSCPKCRHCLIHTCEKIVGCTAQPSSSQPLHETILSIAPLQPEALVRSYREVSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0938 227 SUPERFAMILY RING/U-box 116 185 - -
Bisa02g0938 227 CDD RING-H2_EL5-like 137 180 - -
Bisa02g0938 227 SMART ring_2 138 179 IPR001841 -
Bisa02g0938 227 PANTHER RING-H2 FINGER PROTEIN ATL78 19 218 IPR044602 GO:0016567|GO:0016740
Bisa02g0938 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 184 IPR013083 -
Bisa02g0938 227 FunFam RING-H2 finger protein ATL73 101 185 - -
Bisa02g0938 227 Pfam Ring finger domain 137 180 IPR001841 -
Bisa02g0938 227 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0938 Bisa-ChrBisa02 15817903 15818586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0938 24 184 C3H Transcription Factor Family AT3G10910 46.108 2.54e-41 137