Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa02g0917 | ATGGACTTCGACGAGTACGATTACTTAGAGAAGACAGTGGAGGAGCAGGAAGATCGAGATTTGGGGAAGAAGAAGAAGGAGAGCAGCGAGAAGAGTGAAAGGAGTTACAGGAAGCGTGATGTTGACGATAATCTGGATGGTGAAGACAGGAAGAGTAAGAGGTCCAAAGGCGACGATGAGAATGGGTCAAAGAAGGATCGTGACGACCGCGACAGAGAACGGTCTAGCCGCGAAAAGGAGCGGCATAGGAGTGGCAGGGACAGGGATGGGGAGAGAGATGGAGAGCGAGAGCGAGAGAGGAGCAGTAGAGAGAAGGATAGGGAGAAGGAGAGAGACAAGGAGAGGGATAAGGATAGAGAGAGGGAAAGAGACAGAAGGGACAAAGAGAGGGAGCGGGAGAAAGAAAGAGAGAGGGAGAGAAGAGAAAGGGATAAAGAGAGGGAAAGAGAACGGGAGAGAAGGGAGAAGGAGAAGGAGAAGGAGAAGGAAAGAGAGAAGGAGAGGGAGGAAAGAGAGAGGTCCAGGAGAAGCATAAGTCGTCCTGATAGAGATAGAGAGAGAGAACGAGAATCGGAAGTTAGAGATAGCCGGAGATTTAGGGACAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCCTAAAGGCAACAGAGAGGGATGTTTATGAATTTTTCTCAAAAGCTGGCAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAATTTTATGATGCAATGTCAGTGCCGATGGCAATTGCTCTCTCTGGCCAACTGCTTCTTGGACAACCTGTAATGGTCAAGCCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACTGGAGCTACTGGTGTAGCAGGACCATATGGAGCAGTAGACAGGAAACTGTATGTGGGGAACCTTCACTTCAACATGACAGAGAGTCAGCTCAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACCTGGAGACAGGACACTGCAAGGGTTTTGGTTTTGTGCAATTTTCCCATCTTGAACACGCCAAAGCAGCTCAAAGTTTAAATGGAAAATTGGAGATTGCTGGTAGGACTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGATACAAGTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCACAATCAAGGGCATTGCTGATGCAGAAGCTGGATCGTTCTGGCATTGCCACAAGCATTGCAGGGTCTGTTGGTGTGCCCATTGTTAATGGGTCAGCTCCTGCTCAACAGACTGCTAGCTTGCCTAGTGCTCCAGGTATAATGCCTGCACCAGCTCTGGCAACACAAATTATGCCTGCCCCAGTGGTAGAACCTGTTGGAACCCCCAGCGAGTGTCTACTGTTGAAGAACATGTTTGATCCTAGCACTGAGACAGAACCAGATTTTGATATTGACATTAAGGAGGATGTGGAAGAAGAATGCTCTAAATTTGGACGGGTGAAGCATATTTATGTGGACAAAAGAAGTGCAGGATTTGTGTATCTGCGGTTTGAAACAGTGGAAGCAGCAAGTGGTGCTCAACGTGCAATGCACATGAGATGGTTTGCACGCAGGTTAATTTCAGCTATCTTCATGCAACCCCAGATATATGAAGCTAAGTTTAAAACGGAAGCTTGA | 1761 | 0.4719 | MDFDEYDYLEKTVEEQEDRDLGKKKKESSEKSERSYRKRDVDDNLDGEDRKSKRSKGDDENGSKKDRDDRDRERSSREKERHRSGRDRDGERDGERERERSSREKDREKERDKERDKDRERERDRRDKEREREKERERERRERDKERERERERREKEKEKEKEREKEREERERSRRSISRPDRDRERERESEVRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGATGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFSHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGSQDTSAKSADFDDDEGGLALNAQSRALLMQKLDRSGIATSIAGSVGVPIVNGSAPAQQTASLPSAPGIMPAPALATQIMPAPVVEPVGTPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLRFETVEAASGAQRAMHMRWFARRLISAIFMQPQIYEAKFKTEA | 586 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa02g0917 | 586 | Coils | Coil | 119 | 177 | - | - | |
| Bisa02g0917 | 586 | FunFam | Splicing factor, CC1-like protein | 487 | 586 | - | - | |
| Bisa02g0917 | 586 | Gene3D | - | 487 | 586 | IPR012677 | - | |
| Bisa02g0917 | 586 | CDD | RRM1_RBM39_like | 218 | 290 | - | - | |
| Bisa02g0917 | 586 | MobiDBLite | consensus disorder prediction | 12 | 215 | - | - | |
| Bisa02g0917 | 586 | SUPERFAMILY | RNA-binding domain, RBD | 210 | 298 | IPR035979 | GO:0003676 | |
| Bisa02g0917 | 586 | Gene3D | - | 210 | 304 | IPR012677 | - | |
| Bisa02g0917 | 586 | Gene3D | - | 315 | 411 | IPR012677 | - | |
| Bisa02g0917 | 586 | CDD | RRM3_RBM39_like | 491 | 573 | - | - | |
| Bisa02g0917 | 586 | CDD | RRM2_RBM23_RBM39 | 321 | 398 | - | - | |
| Bisa02g0917 | 586 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 217 | 294 | IPR000504 | GO:0003723 | |
| Bisa02g0917 | 586 | SMART | rrm1_1 | 493 | 570 | IPR000504 | GO:0003723 | |
| Bisa02g0917 | 586 | SMART | rrm1_1 | 218 | 290 | IPR000504 | GO:0003723 | |
| Bisa02g0917 | 586 | SMART | rrm1_1 | 320 | 393 | IPR000504 | GO:0003723 | |
| Bisa02g0917 | 586 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 319 | 397 | IPR000504 | GO:0003723 | |
| Bisa02g0917 | 586 | FunFam | Splicing factor CC1-like | 303 | 408 | - | - | |
| Bisa02g0917 | 586 | FunFam | Splicing factor CC1-like | 141 | 302 | - | - | |
| Bisa02g0917 | 586 | NCBIfam | splicing factor, CC1-like family | 103 | 582 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Bisa02g0917 | 586 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 515 | 568 | IPR000504 | GO:0003723 | |
| Bisa02g0917 | 586 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 321 | 391 | IPR000504 | GO:0003723 | |
| Bisa02g0917 | 586 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 224 | 286 | IPR000504 | GO:0003723 | |
| Bisa02g0917 | 586 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 412 | 510 | IPR029123 | - | |
| Bisa02g0917 | 586 | MobiDBLite | consensus disorder prediction | 1 | 215 | - | - | |
| Bisa02g0917 | 586 | SUPERFAMILY | RNA-binding domain, RBD | 319 | 575 | IPR035979 | GO:0003676 | |
| Bisa02g0917 | 586 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 583 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa02g0917 | Bisa-ChrBisa02 | 15516530 | 15522174 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa02g0917 | 299 | 392 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.842 | 6.74e-08 | 53.5 |