LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g0912	ATGTCAGTGCCGATGGGATTTCCAGGGATCGATAGGGACAAGGAGATGTCTGCTATGGTTTCAGCTTTGACACATGTGGTGTCTGGAGATGTGCCTTATTCCTTTTCTGCATGTTCAAGTGTAGTTGAAGCTTCTGCAACGCCATCTTCGTCCTCTTCATCTTATGGTGGCGGTTTTACTCTGAAGAGAAGTCGCGAAGATGGTTCATCCCCTGCCTTGCAAACAATGGGAGAGTGCTCAAGCTATTGGGGCACAGGTAGAACAGCAGAACTGGGGGAAACGACGACGAAGTGTGTGTATGAATACAGAAAAACAGAGGAAGCGGCGAGTGTGGAGGGAAGAAGAAGAAAGTACAGAGGAGTGAGACAGAGGCCGTGGGGGAAGTGGGCCGCAGAAATCAGAGATCCGTTCAAAGCAGCGAGAGTGTGGTTAGGCACTTTCGAAACAGCCGAAGCCGCCGCCAGAGCGTACGACGAAGCGGCCCTGAGTTTCAGAGGCAACAAGGCCAAGCTCAATTTCCCCGAAAATGTCACTATCCGTCAAATTCCAATCTTTCAGACTCAATCTCTCCATCAATTTCAGGGATCTGAGATCGGAAATCTCCCTGTGAATTTCGGTCCGTACGATCAGATCATGATTCAGTCGGCGACGATGGGTTCTCATCTTCATTCGTCCTTATCGCCACCGTCGCCTTCCTCGTTTTCTGCCTTTGCTTCGCCTGTGACTTCTTCGGACGCACCTTCACTTCCGTCTCTCTCTTCTTCGCATAGTCAAACGAATGGTTCTGCGTATGTAGTGCCTTCGGATTGTTCTCCTTTGACGTATTCCTCTTCCTCTGGATGA	843	0.4994	MSVPMGFPGIDRDKEMSAMVSALTHVVSGDVPYSFSACSSVVEASATPSSSSSSYGGGFTLKRSREDGSSPALQTMGECSSYWGTGRTAELGETTTKCVYEYRKTEEAASVEGRRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALSFRGNKAKLNFPENVTIRQIPIFQTQSLHQFQGSEIGNLPVNFGPYDQIMIQSATMGSHLHSSLSPPSPSSFSAFASPVTSSDAPSLPSLSSSHSQTNGSAYVVPSDCSPLTYSSSSG	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g0912	280	PANTHER	DNA-BINDING DOMAIN	71	244	IPR044808	GO:0003700\|GO:0009873
	Bisa02g0912	280	SMART	rav1_2	117	180	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0912	280	MobiDBLite	consensus disorder prediction	235	280	-	-
	Bisa02g0912	280	FunFam	Ethylene-responsive transcription factor 2	116	175	-	-
	Bisa02g0912	280	PRINTS	Ethylene responsive element binding protein signature	140	156	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0912	280	PRINTS	Ethylene responsive element binding protein signature	118	129	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0912	280	Pfam	AP2 domain	117	166	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0912	280	SUPERFAMILY	DNA-binding domain	117	175	IPR016177	GO:0003677
	Bisa02g0912	280	CDD	AP2	117	176	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0912	280	ProSiteProfiles	AP2/ERF domain profile.	117	174	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0912	280	Gene3D	AP2/ERF domain	116	176	IPR036955	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g0912	Bisa-ChrBisa02	15430447	15432024	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g0912	114	190	AP2-EREBP Transcription Factor Family	AT5G61890	70.930	7.67e-36	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa02g0912		AP2	1.6e-14	CL0081