Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0825 ATGGACCATGATCAGGGTTCGAATACGATTTCGGATCCTGGGGTTCCCCTTCAGAATCTCTCGACGATCAGAACGAGAATGGATTCTATGCAACGCTTCCTATCCGAATCCATAAACACCAACACTCTGGTCGGTGCAAATCAGATGAACATGATCTCCAACGAGCTCGTCTCAGCCATCCACCAGATAATCCTAAACGGTGCCGTTCTGGTCTCGTACTCACAGAATTTGACGGCGACTGCGGCATCTGTAAGCTTACCCGAACCACAGGATACGGTACCTTGTAACAAGTCAGAATCTAACTGTTCCGGTAACGACAAGGGTAAACAGGTAATTAACTTGAAAGTTGAGGAATCAGAGAAGGGTGAGGTGAAAGACGAGGGTGAAGATTGCGAAATCGTGGAGATTGACGCCGTGGAATTGCTGGCAGAGCACGTTCATTTCTGCGAAATCTGCGGGAAAGGATTTAGACGCGACGCGAACTTGCGAATGCACATGCGTGCACATGGGAATCGATTCAAGACCCCTGAAGCGTTGGCGAAGCCCGGCTCTGAGAAATTGGAGGACGCGAGCCGTCGAGCGACGACGCGGTTCTCTTGTCCGTTTGGAGGCTGCAATCGGAACAAGTCGCACAAGAAATTCCGGGCGTTGAAATCGATTGTATGCGTGAAGAACCATTTCAAGAGAAGCCACTGTCCGAAAACGTATCCGTGCAATCGGTGTCACAAGAAGAATTTCTCGGTGCTCTCGGATTTGAGGAGCCACATGAAGCATTGCGGGGAGTCAAAGTGGAAGTGCTCGTGTGGAACCACATTTTCCAGAAAGGATAAATTGTTTGGGCACATATCGCTGTTTGAAGGGCATTCACCTGCTCTTGCTGTGGATGAAGAGGGCAAAAAGAAGCAAGCAGAAGGGGAAAGGAGAGTTGGGGTAAATGATTTGGATCATGGGTTACCGGAAGGGTTCTTTGACGATTTAGAGGGTTTCTTTGGTATGTAA 999 0.4895 MDHDQGSNTISDPGVPLQNLSTIRTRMDSMQRFLSESINTNTLVGANQMNMISNELVSAIHQIILNGAVLVSYSQNLTATAASVSLPEPQDTVPCNKSESNCSGNDKGKQVINLKVEESEKGEVKDEGEDCEIVEIDAVELLAEHVHFCEICGKGFRRDANLRMHMRAHGNRFKTPEALAKPGSEKLEDASRRATTRFSCPFGGCNRNKSHKKFRALKSIVCVKNHFKRSHCPKTYPCNRCHKKNFSVLSDLRSHMKHCGESKWKCSCGTTFSRKDKLFGHISLFEGHSPALAVDEEGKKKQAEGERRVGVNDLDHGLPEGFFDDLEGFFGM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0825 332 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Bisa02g0825 332 SMART c2h2final6 147 169 IPR013087 -
Bisa02g0825 332 SMART c2h2final6 198 231 IPR013087 -
Bisa02g0825 332 SMART c2h2final6 236 258 IPR013087 -
Bisa02g0825 332 SUPERFAMILY beta-beta-alpha zinc fingers 144 169 IPR036236 -
Bisa02g0825 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 174 IPR013087 -
Bisa02g0825 332 Gene3D Classic Zinc Finger 147 170 - -
Bisa02g0825 332 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 10 303 IPR044300 GO:0010044|GO:0010447
Bisa02g0825 332 Gene3D Classic Zinc Finger 224 292 - -
Bisa02g0825 332 FunFam Zinc finger protein 574 147 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0825 Bisa-ChrBisa02 13945219 13946217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0825 132 296 C2H2 Transcription Factor Family AT1G34370 62.424 5.34e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa02g0825 None None None