Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0712 ATGGACCCGACCTCCGTCCCACCTCCCCCGACCAACACCATCCCCATGCCCACTATCACAGCCGACGCCGGCGCCGTTCCCTCCACCGTCCCGTTCCCCGACGTCGAACCCAACAACTACGTGGCCCCCGCTGCCAATCATCCTTCCTATGATGAGATGATATGTACAGCAATCGCGGTCCTCAAGGAGAAGAACGGCTCCAGCAAGAGAGCCATCGCCAAGTACATAGAGCAGGCCTACCCCAACCTTCCCCCGACTCACTCCGACTCGTTGACTCACCATTTGCAGCGCTTGAAGAACAATGGTCTCCTCGTCATGGTCAAGAAATCTTACAAGCTCCCTAGATCTGATGCTTCCGCTTCAACCGCCCAAAGCCAAGGAAGACGTGGTCGACCCCCCAAGCCCAAGCCACAACAACCCCAACCCCACCCACGGCCACAGCTCCAGCTCCAAGCCCAAACCTTCCCTCAGCCCAACGTTCAACTAAATGCGGAGCCAGTGTGGGTTGCGCTTGGGCTTGAAGATGAGCCCGTTAATTTTGAGGTGAAGAAAAGGGGCCCTGGTCGTCCACCGAGGAGTGGGGCAGGGGTGGTGGGCCAATCTGGGCCGCCGGCGCGGAGGGGGCGACCACCTGGGTCTAAAACTGGGCCAGGAAGGCCTGGTCGCCCTCCCAAGCCCAAATCTGTGTCGGCATTTTCAAATGGGCCTAAGAGGGGTCCGGGTCGCCCTCCCAAGAGCAAGAATCAATCAAGCTTAACGGTCCCTTTTGCTGCTCCTGCACCTGCTCCCAGTGTACCCGCAGGCGCTGCTTCCGAAGTACCGCTAACTGCACCAACTGTACTATCTGCTACCGTACCTAGTATATCTCGAAGAGGTAGAGGACGGCCGAAGAAGAATGCAGTTGCGGTGCCACCTCACGGAGCTGCACCACAAGCTGTCGGTGGCCGTGGCCGTGGACGGGGTCGCGGGCGAGGACGCGGTTTAATGCAGAGACGACCTCCCAAGAAATATTCTACCGGAAGATCTGTGGGCCGCCCCAAGAAGGGAAAATCTGCTAGTGACGATCACAGGAGGAAACTTGAATATTTTCAATCAAAAGTGAAGGAATCTCTTGGTGTGATTAAGCCCCATTTTAACCATGAAAGTCCAGTCACTGCAATTGCTGCAATTCAAGAATTAGAGATACTGGCAACAATGGACCTTAGTGCGCCATTAGGAGATGAAACGCAGCAAATGCCGCAGTTGCCTCAGCAAGCACCAGTTCCTCAACCACAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCCAGTGGATGCAGATACCACCACAGCATCTATTTGAAACGCAGCAACTATTTCCACCACCAAGCTAG 1374 0.5662 MDPTSVPPPPTNTIPMPTITADAGAVPSTVPFPDVEPNNYVAPAANHPSYDEMICTAIAVLKEKNGSSKRAIAKYIEQAYPNLPPTHSDSLTHHLQRLKNNGLLVMVKKSYKLPRSDASASTAQSQGRRGRPPKPKPQQPQPHPRPQLQLQAQTFPQPNVQLNAEPVWVALGLEDEPVNFEVKKRGPGRPPRSGAGVVGQSGPPARRGRPPGSKTGPGRPGRPPKPKSVSAFSNGPKRGPGRPPKSKNQSSLTVPFAAPAPAPSVPAGAASEVPLTAPTVLSATVPSISRRGRGRPKKNAVAVPPHGAAPQAVGGRGRGRGRGRGRGLMQRRPPKKYSTGRSVGRPKKGKSASDDHRRKLEYFQSKVKESLGVIKPHFNHESPVTAIAAIQELEILATMDLSAPLGDETQQMPQLPQQAPVPQPQPQPQPQPQPQPQWMQIPPQHLFETQQLFPPPS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0712 457 MobiDBLite consensus disorder prediction 402 457 - -
Bisa02g0712 457 PRINTS AT-hook-like domain signature 184 194 IPR017956 GO:0003677
Bisa02g0712 457 PRINTS AT-hook-like domain signature 235 246 IPR017956 GO:0003677
Bisa02g0712 457 PRINTS AT-hook-like domain signature 288 298 IPR017956 GO:0003677
Bisa02g0712 457 SMART h15plus2 44 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa02g0712 457 FunFam Histone H1.2 43 123 - -
Bisa02g0712 457 PANTHER HISTONE H1 21 248 - -
Bisa02g0712 457 Gene3D - 43 125 IPR036388 -
Bisa02g0712 457 MobiDBLite consensus disorder prediction 181 360 - -
Bisa02g0712 457 MobiDBLite consensus disorder prediction 417 439 - -
Bisa02g0712 457 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 46 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa02g0712 457 MobiDBLite consensus disorder prediction 112 147 - -
Bisa02g0712 457 SUPERFAMILY "Winged helix" DNA-binding domain 44 120 IPR036390 -
Bisa02g0712 457 Pfam linker histone H1 and H5 family 47 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa02g0712 457 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Bisa02g0712 457 SMART AT_hook_2 340 352 IPR017956 GO:0003677
Bisa02g0712 457 SMART AT_hook_2 290 302 IPR017956 GO:0003677
Bisa02g0712 457 SMART AT_hook_2 184 196 IPR017956 GO:0003677
Bisa02g0712 457 SMART AT_hook_2 237 249 IPR017956 GO:0003677
Bisa02g0712 457 SMART AT_hook_2 204 216 IPR017956 GO:0003677
Bisa02g0712 457 CDD H15 44 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0712 Bisa-ChrBisa02 12103866 12106375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0712 51 165 Single Myb Histone (SMH) Gene Family AT1G49950 33.043 5.78e-07 49.3