Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0656 ATGGCGACGCCGTTGACGGGACTGCAGCATTTGGACGGAGGTGGAGGAGTGGCGGTGCTTTCAAATTCTGTGAATAAGGTCGATTCTTCCTCGCCTTCATCCTCAGCGTCCAATGGCGGCTTGAACTACTCTAAATTGGAGTCGCCAATCTTGATTTTCTTGTTCTTTCATAAAGCGATTCGAAATGAGCTTGATGCTCTTCACCGATTAGCTATGGCATTTGCCACCGGCAATCGCTCTGATATTCAGCCGCTCTTCGAACGCTACCATTTCCTCAGATCCATTTATAGACACCACTCCAATGCTGAAGATGAGGTAATTTTTCCTGCCCTTGATATACGTGTGAAGAATGTGGCACAGACATATTCTCTTGAGCACAAGGGTGAAACCAGTCTCTTTGATCATCTATTTGAGCTGTTAAATTCTACCATCCAGAATGATGAAAGTTTCTCAAAGGAGTTAGCATCCTGTACGGGTGCTCTGCAGACATCAGTTAGTCAACACATGGCAAAGGAAGAGGAGCAGGTATTTCCACTGCTTATTGAGAAATTCTCACTTGAGGAACAAGCATGTCTGGTTTGGCAATTTCTGTGCAGTATTCCTGTCAATACAATGGCAGAATTTCTTCCCTGGCTTTCAACATCTATATCACCTGATGAATCTAAGGATCTGCAGAAGTGCTTAAGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACTTGGATGGAAGGCAGAAGTGGTGCCAGCATGGTTGAAAGTTGTGTAGATCATTCTCAGGTTCAATGTAGTCCAAGCCCATTAACCCATCTGATTGAGAGGGTAAACTTTGCGTGTGAGTCCACAACAACTGGGAAAAGGAAATATTCTGAATCTGTTCTGGATGTTTCTGATACAACTGGAACACATCCTATAGATGAAATATTGCTCTGGCATAATGCAATTAAAAAAGAGTTAAGTGATATAGCAGTGGAGACCAGAAAGATACAACTTTCTGGAGATTTTACTAATTTGTCAGCTTTTAATGAAAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATATTTCCTGCTGTAGACAGAGAACTTTCATTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGCTGTTTGATTGAAGGTATTCAAAGTGAAGGAGCAACATTCAATTCAGAAGCTGAATTTTATTCCAAGTTATGCTCACATGCTGATCATATTATGGAAACCATACAGAGGCATTTCCGAAATGAAGAAGTTCAGGTTCTTCCACTTGCTCGGAAGCACTTCAGCTTCGAAAGACAACGTGAACTACTGTATCAAAGCTTGTGCATGATGCCTCTGAAATTGATTGAACGTGTCCTGCCGTGGTTGGTAGGATCATTAACTGAAGATGAAGCAAAGATGTTTTTGAAAAACATGCAAATGGCAGCTCCTGTAGTAGATTCTGCTCTAGTCACACTCTTCTGTGGTTGGGCTTGCAAGGCTCGTAAGGAGGGTCTTTGCTTGTCTCCTAGTGCATCAGGTTGCTGTCCTGCTAAAAAACTTGCTGATATTGAAGAAAACTGTGTTCAGTCATCCTGTGCTTGTGCATCTGCTTCTGCATTATTAACTACTAGAGGTTGCTTGGTATCAGCTGAGTCAGAAGAAAGCAAACGACCAGTCAAGAGAAATGTAATGGAATTGTGCAAGAATGGAGATGTCCCTGAAACTTCAAAGGCTGAAAGTATCGAAAATCAATGTTGTAGTGCTAGGTCTTGTTGTGTGCCAGCATTAGGAGTAAGCAGTAACAATTTGGGGCTGAGTTCTCTTTCTACTACCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTCCCCCCCTTCTCTTAATTCCAGTCTTTTCATATGGGAAACAGATAACAACTCATGTGACCCTGACTCTGCAGAAAGGCCAATTGATACTGTATTTAAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTAGTGATGGTGATGAGACAATTCTTCGTCAATTTACCGGAAGATTTCGTCTTTTATGGGGGCTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTATTTCCAGCATTGGAATCCAAAGAGGCACTTCATAATGTGAGCCATTCATACATGCTGGACCACAAGCAGGAAGAAAAATTATTTGAGGATATTTCCTGTGTTCTTTCTGAGCTTTCTGTGCTTCAGGAAAGTTTGCTGATAATCAATACATCAGAGGATACTAGGAAAAGTAATTTTGAGGCTTCTGATTCCAGTGTTAGTGATAATATCAGAAAGTATAAAGATCTAGCTACTAAACTTCAAGGGATGTGCAAATCCATAAGAGTGACCCTGGATCAGCATATCTTCAGAGAAGAGCGTGAGCTCTGGCCATTGTTTGGGAGACATTTCACTGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGTACTACTGGTGCTGAAGTTCTCCAGTCAATGTTACCATGGGTAACTTCTGCACTGACTCAGGATGAACAGAACAAAATGATGGACACATGGAAACAGGCAACTAAGAACACTATGTTCAATGAATGGCTTAATGAATGCTGGAAAGAGAGTCCATCGTCTATCTCACTGACTGAAACATCAGAGCATAACACTTCCCAAAGAGGTACTGAATATCAAGAAAGCTTGGACTTGAATGATCAGATTTTTAAGCCAGGTTGGAAAGATATATTTCGGATGAATCAGAATGAGCTTGAGTCAGAGATTCGGAAGGTTTATCAAGATTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTAATGACTAGTCGCTGGATTGCTTCCCAGCAGAAGTTACCTAAAGCTGTAGCTGGGGAGTCCTCTAATGGTGAAGAAATAGAAGGACGCACACCATCATTTAGGGACCCCGAGAAAAAAGAATTTGGGTGTGAGCATTACAAGAGAAATTGCAAACTTCGAGCTGCATGTTGTGGCAAGTTGTTTGCATGCAGATTTTGCCATGACAATGTGAGCGATCACTCAATGGATAGAAAAGCAACATCAGAAATGATGTGTATGAGCTGCCTGAATATACAAGCGGTTGGGCCTATATGCATGACCCCTTCGTGTCAAGGACTTTCAATGGCAAAATATTATTGCAACATATGCAAATTTTTTGATGATGAAAGGAATGTATACCATTGCCCATTTTGCAATTTATGCCGAGTGGGGAGAGGCCTTGGAATTGATTATTTTCATTGTATGAAATGCAATTGTTGCCTTGGGATTAAATCTGCATCTCACAAGTGCCTGGAGAAAAGTTTGGAAATGAACTGTCCAATTTGCTGTGACTTCTTATTCACATCAAGTGCTACAGTCAGATATTTACCTTGCGGCCATTATATGCATTCAGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATTTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTCGATGCTTTGTTGGCTGCTGAGGAGCTTCCTGAAGAGTACAAGGACCGTTATCAGGATATACTGTGCCATGACTGTGATCGAAAGGGCACTTCCCGCTTCCACTGGTTATATCACAAATGTGGATTTTGCGGTTCATACAATACCCGGGTGATCAAGTCTGAGGCAACCAATTCCCTCTGCACTTAG 3753 0.4151 MATPLTGLQHLDGGGGVAVLSNSVNKVDSSSPSSSASNGGLNYSKLESPILIFLFFHKAIRNELDALHRLAMAFATGNRSDIQPLFERYHFLRSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGETSLFDHLFELLNSTIQNDESFSKELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQACLVWQFLCSIPVNTMAEFLPWLSTSISPDESKDLQKCLSKIVPEEKLLQKVIFTWMEGRSGASMVESCVDHSQVQCSPSPLTHLIERVNFACESTTTGKRKYSESVLDVSDTTGTHPIDEILLWHNAIKKELSDIAVETRKIQLSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAVDRELSFFQEHAEEESQFNDFRCLIEGIQSEGATFNSEAEFYSKLCSHADHIMETIQRHFRNEEVQVLPLARKHFSFERQRELLYQSLCMMPLKLIERVLPWLVGSLTEDEAKMFLKNMQMAAPVVDSALVTLFCGWACKARKEGLCLSPSASGCCPAKKLADIEENCVQSSCACASASALLTTRGCLVSAESEESKRPVKRNVMELCKNGDVPETSKAESIENQCCSARSCCVPALGVSSNNLGLSSLSTTKSLRSLSFSSSPPSLNSSLFIWETDNNSCDPDSAERPIDTVFKFHKAIRKDLEYLDVESGKLSDGDETILRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSELSVLQESLLIINTSEDTRKSNFEASDSSVSDNIRKYKDLATKLQGMCKSIRVTLDQHIFREERELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLNECWKESPSSISLTETSEHNTSQRGTEYQESLDLNDQIFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIASQQKLPKAVAGESSNGEEIEGRTPSFRDPEKKEFGCEHYKRNCKLRAACCGKLFACRFCHDNVSDHSMDRKATSEMMCMSCLNIQAVGPICMTPSCQGLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGRGLGIDYFHCMKCNCCLGIKSASHKCLEKSLEMNCPICCDFLFTSSATVRYLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYKDRYQDILCHDCDRKGTSRFHWLYHKCGFCGSYNTRVIKSEATNSLCT 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0656 1250 Gene3D - 1205 1246 - -
Bisa02g0656 1250 ProSiteProfiles Zinc finger RING-type profile. 1134 1176 IPR001841 -
Bisa02g0656 1250 CDD Hr-like 309 438 - -
Bisa02g0656 1250 SUPERFAMILY Zinc hairpin stack 1071 1127 IPR037275 -
Bisa02g0656 1250 CDD Hr-like 665 820 - -
Bisa02g0656 1250 SUPERFAMILY CHY zinc finger-like 998 1061 IPR037274 GO:0008270
Bisa02g0656 1250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1127 1178 IPR013083 -
Bisa02g0656 1250 Pfam Ring finger domain 1133 1175 IPR001841 -
Bisa02g0656 1250 Gene3D nmb1532 protein domain like 46 197 - -
Bisa02g0656 1250 Gene3D nmb1532 protein domain like 309 456 - -
Bisa02g0656 1250 CDD RING-H2_Pirh2-like 1133 1176 - -
Bisa02g0656 1250 SUPERFAMILY RING/U-box 1131 1186 - -
Bisa02g0656 1250 Pfam Hemerythrin HHE cation binding domain 306 440 IPR012312 -
Bisa02g0656 1250 Pfam Hemerythrin HHE cation binding domain 54 180 IPR012312 -
Bisa02g0656 1250 Pfam Hemerythrin HHE cation binding domain 658 821 IPR012312 -
Bisa02g0656 1250 SMART ring_2 1134 1175 IPR001841 -
Bisa02g0656 1250 Pfam Zinc-ribbon 1181 1238 IPR039512 -
Bisa02g0656 1250 ProSiteProfiles Zinc finger CHY-type profile. 998 1067 IPR008913 GO:0008270
Bisa02g0656 1250 CDD Hr-like 52 178 - -
Bisa02g0656 1250 FunFam Zinc finger protein-related isoform 1 1129 1178 - -
Bisa02g0656 1250 Gene3D nmb1532 protein domain like 654 894 - -
Bisa02g0656 1250 ProSiteProfiles Zinc finger CTCHY-type profile. 1070 1133 IPR017921 -
Bisa02g0656 1250 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 701 1245 - -
Bisa02g0656 1250 Pfam CHY zinc finger 1005 1080 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0656 Bisa-ChrBisa02 11130548 11140470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0656 1 1250 C2H2 Transcription Factor Family AT3G18290 67.591 0.0 1712