LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g0654	ATGCAATTTCGTGAGAAAACAAAAGGAAGCATAAAAATTTCGATCAAACGTCAGGAAAAGGCTACTATGCGCCTTGGAGTCCCTGTTCTGACTGTACTACCAGACATTGGAGGAAGACAAGTAGAGAAGCATCACAAATTCACAGTCAACGTCGTTGATCGTCGTCGTCAAGGAGGGACGACGGCGTCGATGAGTTTTGTGTGCAGGTTATGTCCCTGCTTGGACAAGAGGCTCAAGGGCAACGCGGCCTCTGATCCTAACCAATCTCAGGGAGCCAACGATGGCGCCGACATGTGGGACATATTCTTCGACCTCCATACTCTGCAAGTAGCCACCAACTTCTTCTCTGAGCTGAACCAGTTGGGTCATGGGGGCTTTGGTCCCGTCTTTAAGGGGTTGATGCCAAATGGTCAAGAAATAGCTGTTAAGAAGCTGTCTCTAAATTCAAGACAAGGAGTTAGAGAATTTACGAATGAGGTCAAACTACTGCTAAAACTTCAGCATAAGAACTTGGTTACATTATTCGGGTGTTGCGCCGAAGGACATGAAAAGATGCTGGTTTATGAGTATCTTCCAAACAAAAGCCTCGATCACTTTATCTTCAATAAAAAGAAGTCAACATCTTTGGACTGGGCAACACGATTCAGAATAGTTATAGGTGTGGCAAGAGGACTTCTGTACCTGCATGAAGAAGCCCCAACAAGAATTATTCATAGAGACATCAAAGCTAGTAATATATTGCTGGATGAGAAATTAAATGCAAAAATTTCAGACTTTGGCTTGGCAAGGCTATTTCCTGGGGATGACACTCATGTGCAAACATTTAAGATTTCTGGTACACATGGTTATATGGCTCCTGAATATGCACTGCGTGGATACTTATCTGTGAAGACAGATGTTTTCAGTTATGGAGTGTTGGTGTTAGAAATTGTTAGTGGCCGAAAAAACCATGACCAGCGGCTCGATGAAGAAAAGGCAGATCTCTTGAACTACGCATGGAAGCTATATCAGACAAAAAAGACAATGGATTTAATTGACACAACCCTTGCCGGATACAACGGCGACGAGGCAGCGATGTGCATTCAGCTGGGTTTGTTGTGCTGTCAAGCGAGTATACAAGAAAGACCTGATATGAATGCTGTTCATCTGATGCTGTCAAGCGACTCATTCACTTTGCCAAGACCAGGTAAGCCAGGAATTCATGGCCGTGTAGGACGTTGGACTACAACGTCAACTGCTTTGACGAATTCGAATGCTACTAGTGCAACCAGGGCTTCTGGAGGTAGTAGTTTTGTAGAGGACTATTCTAGAAATTCTATTTCTACTTCTTCTTTTGATGAAGGGTTTAGGTTATTGAAGAACTGGTACATGAGGAAGTCTAAGTTCAATTTGGAAAACGATATCATAGTTTCTTGTGTTAGTTACGCGGATCAAGAATCACCGTCTCCCAACACTTCCAATCATTACCTTCATTCTGAATCATCATCGTCTTCTTCCCTTTATTCTCAGCCAAGCCTTCCTTCAATGCCCTCTCTCACCCCACAACCACCACAGCCCCAACAAACCCAAACTACTTGTAACAAACTCGTAACCACTCTCGCTTCACCTCACTCCTCTCCCATTTTCTTCCTTATTCATGGTAAATTCCTTTACACCAGCTCCTCCAACTCCCAAATTCGCACTTGGACCCGAAACCCCGATTTCGTCGACAGTGCTCCCAATGAAGTTGTTGCAAATACCAATGGAGCCGTCAAATCTTTAGTCGTGTCTGGCGACAAGTTGTACAACGCTTCAAAAAAAATTTCAAGCTCTAATCCGTGA	1821	0.4371	MQFREKTKGSIKISIKRQEKATMRLGVPVLTVLPDIGGRQVEKHHKFTVNVVDRRRQGGTTASMSFVCRLCPCLDKRLKGNAASDPNQSQGANDGADMWDIFFDLHTLQVATNFFSELNQLGHGGFGPVFKGLMPNGQEIAVKKLSLNSRQGVREFTNEVKLLLKLQHKNLVTLFGCCAEGHEKMLVYEYLPNKSLDHFIFNKKKSTSLDWATRFRIVIGVARGLLYLHEEAPTRIIHRDIKASNILLDEKLNAKISDFGLARLFPGDDTHVQTFKISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNHDQRLDEEKADLLNYAWKLYQTKKTMDLIDTTLAGYNGDEAAMCIQLGLLCCQASIQERPDMNAVHLMLSSDSFTLPRPGKPGIHGRVGRWTTTSTALTNSNATSATRASGGSSFVEDYSRNSISTSSFDEGFRLLKNWYMRKSKFNLENDIIVSCVSYADQESPSPNTSNHYLHSESSSSSSLYSQPSLPSMPSLTPQPPQPQQTQTTCNKLVTTLASPHSSPIFFLIHGKFLYTSSSNSQIRTWTRNPDFVDSAPNEVVANTNGAVKSLVVSGDKLYNASKKISSSNP	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g0654	606	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	77	190	-	-
	Bisa02g0654	606	Pfam	Protein tyrosine and serine/threonine kinase	119	382	IPR001245	GO:0004672\|GO:0006468
	Bisa02g0654	606	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	99	420	-	-
	Bisa02g0654	606	Gene3D	Transferase(Phosphotransferase) domain 1	191	391	-	-
	Bisa02g0654	606	MobiDBLite	consensus disorder prediction	480	508	-	-
	Bisa02g0654	606	Gene3D	Phosphorylase Kinase; domain 1	82	190	-	-
	Bisa02g0654	606	CDD	STKc_IRAK	121	385	-	-
	Bisa02g0654	606	MobiDBLite	consensus disorder prediction	480	524	-	-
	Bisa02g0654	606	SMART	serkin_6	115	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g0654	606	SUPERFAMILY	Protein kinase-like (PK-like)	100	385	IPR011009	-
	Bisa02g0654	606	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	236	248	IPR008271	GO:0004672\|GO:0006468
	Bisa02g0654	606	ProSiteProfiles	Protein kinase domain profile.	115	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa02g0654	606	FunFam	Cysteine-rich receptor-like protein kinase 41	191	391	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g0654	Bisa-ChrBisa02	11088386	11092633	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g0654	70	400	Receptor kinase-like Gene Family	AT4G21410	48.547	6.23e-108	338

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bisa02g0654		PK_Tyr_Ser-Thr	8.6e-47	CL0016