Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0653 ATGTCTTCTTCTTCCAAGAGCACGAGCAGTTCTAGCGATGATGACGCCGAACTCAGACGAGGACCTTGGACTCTTGAAGAGGACACTGTTCTTTCCCAATACATCTCCAGCCACGGTGAAGGAAGATGGAATTTGCTGGCGAAACGTTCAGGGTTAAAGAGAACAGGAAAGAGTTGCAGATTAAGATGGCTCAATTATCTGAAACCAGATGTAAAGCGAGGAAATTTAACCCCAGAAGAACAGCTTCTTATTCTTGAACTCCACTCTAAGTGGGGCAACAGATGGTCAAAAATTGCACAACATTTGCCAGGAAGGACAGACAATGAGATAAAGAACTACTGGAGAACTCGGGTTCAGAAGCAAGCCAGGCATTTGAAGATTGACACAAACAGCACTGAGTTTCGAGAAATTGTGAGGCGTCTTTGGATGCCAAGATTGCTTCAGAAAGCAAAAGAATCGTCTTCTTCACCCATGTCACTCCAACACCAGCCATTTCCTTTGCCTCTTGACACTGCTTTTTCTCAGGATTCATCCATGGAAACAACACCAACACCAGTTCCGTTTCAGGGAACTTGCATCAATGAAGCATATATGAATAGTTGGTATCAAAGTGAACAGAACTCAGATTCAGAGCACAACAATAGTTCATACATGTCCTCTTCAGAATCAGCAAATATCCCTTTTGGATACAATAACAGTACTGGTCAATTTCATGCCTTGGACTACTTTGGAAACAGCAATGTTGATTTTGATATGGAGACCTTCAATCTGGAAACCATGGAGTACCCAGTTGGTGATGATTCCCACGCGGCAGAAACCAGCAGCGGATCTCTCTGGGCATCCATCTTCTTGAGAGCTGTGAAGATGTACACATCAAGGAAGAAAATCCACAAAGATAAGGATGTTGAGCCAACTGAGTTTGAAGAATCTGTCGGACAGGCACTTTTTGATATGGAAAATACCAACCAGGAGCTGAAAAGTGATCTAAAAGATCTGTACATAAATTCAGCAATTCAAATTGATGTTTCTGGGAACCGCAAGGCTGTGGTCATCCATGTTCCTTACAGGTTGAGGAAAGCTTTCCGAAAGATTCATGTTAGGCTTGTCAGAGAGCTTGAGAAGAAATTCAGTGGGAAGGATGTAGTCATGATTGCAACCCGGAGGATAGTAAGGCCACCAAAGAAAGGATCGGCTGTTCAGCGTCCTCGTAGCCGTACCCTTACAGCTGTGCATGAAGCTATGCTGGAGGATATTGTATTGCCTGCCGAGATTGCTGGGAAGCGTGTTAGGTATCGAGTTGATGGATCCAAGATTATGAAGGTTTTCTTGGACCCTAAGGAGCGAAACAACACTGAGTACAAGCTGGATACTTTTGCTGCAGTATACAGGAAGCTTTCAGGCAAAGACGTTGTGTTTGAGTATCCTATCACAGAGGCTTAA 1440 0.4382 MSSSSKSTSSSSDDDAELRRGPWTLEEDTVLSQYISSHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPEEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDTNSTEFREIVRRLWMPRLLQKAKESSSSPMSLQHQPFPLPLDTAFSQDSSMETTPTPVPFQGTCINEAYMNSWYQSEQNSDSEHNNSSYMSSSESANIPFGYNNSTGQFHALDYFGNSNVDFDMETFNLETMEYPVGDDSHAAETSSGSLWASIFLRAVKMYTSRKKIHKDKDVEPTEFEESVGQALFDMENTNQELKSDLKDLYINSAIQIDVSGNRKAVVIHVPYRLRKAFRKIHVRLVRELEKKFSGKDVVMIATRRIVRPPKKGSAVQRPRSRTLTAVHEAMLEDIVLPAEIAGKRVRYRVDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFEYPITEA 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0653 479 ProSitePatterns Ribosomal protein S7e signature. 367 380 IPR000554 GO:0003735|GO:0005840|GO:0006412
Bisa02g0653 479 SMART sant 72 120 IPR001005 -
Bisa02g0653 479 SMART sant 19 69 IPR001005 -
Bisa02g0653 479 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Bisa02g0653 479 Gene3D - 76 118 - -
Bisa02g0653 479 Coils Coil 315 335 - -
Bisa02g0653 479 CDD SANT 77 116 IPR001005 -
Bisa02g0653 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Bisa02g0653 479 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Bisa02g0653 479 PANTHER 40S RIBOSOMAL PROTEIN S7 289 478 IPR000554 GO:0003735|GO:0005840|GO:0006412
Bisa02g0653 479 Gene3D - 20 72 - -
Bisa02g0653 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Bisa02g0653 479 FunFam Myb transcription factor 20 72 - -
Bisa02g0653 479 FunFam MYB transcription factor 77 140 - -
Bisa02g0653 479 Pfam Ribosomal protein S7e 295 474 IPR000554 GO:0003735|GO:0005840|GO:0006412
Bisa02g0653 479 CDD SANT 22 67 IPR001005 -
Bisa02g0653 479 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Bisa02g0653 479 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Bisa02g0653 479 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0653 Bisa-ChrBisa02 11079543 11086258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0653 289 479 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 78.534 6.10e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa02g0653 Ribosomal_S7e 3.4e-78 CL0652