Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0594 ATGGATTCTCTTCCGATGAGTCTCGCAGGCCCAGTTAACCGCGAGACAAGATCCATCAAGAAGCCAAAATTGTCAGACCAAATGGAAATTCCTCCTCCGATCGAGGTTGTGGATGTCGAAGCCTTATGCTTCACACCCATCTCCGACAAGGGCACAAGCAAATCCAGCGCCATCTCCGTCGAGCAGTACACCCACGACAGAGACCTCCACCTCGCGATCATGGCGTCTCTGGGCAAAACAAAGCCTCCACCGGAAATCCTCATCGACCTTTCCGACGGCGATGACGATGACGAGGTGAGAGTTCTTAGGTTTAAACCCGAAAATACCCCTTCTCGGAAGCGAATAAAATCCAGAAAATTTTCCGAACCAGGGGAATCTTCCAATTCCATACCATTTGTTTGTGAAATCTGTACGGAGACCAAGACTGCAAACGAGTCGTTTAGCATCAGTGGTTGCTCCCACGCTTATTGTAGCGAGTGTATTGTTATGTACGTGGGGTCTAAGCTGCAAGAAAATATTGTCAACATTAGGTGTCCTGTGTCCGAGTGCAGAGGATTGTTGGAGCCTGATGATTGCCGTGGAATTCTTCCGGTGGAGGTATATGATAGGTGGGGTAATGCTTTGTGTGAGGCTGTGATACTTGCAGAAGAAAAGTTTTATTGCCCATATAAGGATTGCTCTGCGCTATTGATTGACGAGGGAGAAGGAGGAGGAGGGCTTATCAGAGAGTCTGAGTGTCCAAACTGTATGAGGCTGTTCTGTGTGCAGTGTAAGGTGCCTTGGCATTCAGGAATTGATTGCGAGGAGTTTCAGAAATTGAGCAAGGACGAGAGAGAGACTGAAGATATTATGCTTATGCAGCTTGCTCAGAACAGCAAGTGGAGGAGGTGTCCCAAGTGCAGGTTCTACGTCGAGAAATCTTCTGGCTGTATGTATATGAGATGCAGGTGTGGAATTGCCTTCTGTTACAATTGTGGAACTCTTTCAAAAGATAACTCTCATAACTGCTATAACTGTAGGCACTAA 1026 0.4708 MDSLPMSLAGPVNRETRSIKKPKLSDQMEIPPPIEVVDVEALCFTPISDKGTSKSSAISVEQYTHDRDLHLAIMASLGKTKPPPEILIDLSDGDDDDEVRVLRFKPENTPSRKRIKSRKFSEPGESSNSIPFVCEICTETKTANESFSISGCSHAYCSECIVMYVGSKLQENIVNIRCPVSECRGLLEPDDCRGILPVEVYDRWGNALCEAVILAEEKFYCPYKDCSALLIDEGEGGGGLIRESECPNCMRLFCVQCKVPWHSGIDCEEFQKLSKDERETEDIMLMQLAQNSKWRRCPKCRFYVEKSSGCMYMRCRCGIAFCYNCGTLSKDNSHNCYNCRH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0594 341 ProSiteProfiles Zinc finger RING-type profile. 134 182 IPR001841 -
Bisa02g0594 341 SUPERFAMILY RING/U-box 132 211 - -
Bisa02g0594 341 CDD BRcat_RBR_unk 217 270 - -
Bisa02g0594 341 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 90 339 IPR031127 GO:0004842|GO:0016567
Bisa02g0594 341 SUPERFAMILY RING/U-box 209 272 - -
Bisa02g0594 341 ProSitePatterns Zinc finger RING-type signature. 152 161 IPR017907 -
Bisa02g0594 341 FunFam RBR-type E3 ubiquitin transferase 129 215 - -
Bisa02g0594 341 SMART ring_2 134 181 IPR001841 -
Bisa02g0594 341 Pfam Zinc finger, C3HC4 type (RING finger) 134 179 IPR018957 GO:0046872
Bisa02g0594 341 CDD Rcat_RBR_unk 293 327 - -
Bisa02g0594 341 FunFam RBR-type E3 ubiquitin transferase 269 341 - -
Bisa02g0594 341 ProSiteProfiles TRIAD supradomain profile. 130 341 IPR044066 -
Bisa02g0594 341 Pfam IBR domain, a half RING-finger domain 284 336 IPR002867 GO:0008270
Bisa02g0594 341 Pfam IBR domain, a half RING-finger domain 212 267 IPR002867 GO:0008270
Bisa02g0594 341 MobiDBLite consensus disorder prediction 1 23 - -
Bisa02g0594 341 SMART ibrneu5 202 267 IPR002867 GO:0008270
Bisa02g0594 341 SMART ibrneu5 277 339 IPR002867 GO:0008270
Bisa02g0594 341 SUPERFAMILY RING/U-box 278 340 - -
Bisa02g0594 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 215 IPR013083 -
Bisa02g0594 341 Gene3D - 264 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0594 Bisa-ChrBisa02 10264798 10266691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0594 134 327 C3H Transcription Factor Family AT2G19610 29.851 1.20e-22 96.3