LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa02g0577	ATGGTGAAGCACGGTCCTGAAAAGAACGAAAGGGCCGCTGAGGGAAGCGAATCCAAGTACAAGGGGGTCCGAAAGAGAAAGTGGGGCAAGTGGGTGTCCGAAATTAGACTTCCTAACAGTAGGGAGAGGATTTGGTTGGGATCCTACGACTCCGCAGAGAAGGCGGCGCGTGCATTCGACGCGGCCATGTTCTGCCTACGCGGCCGCAACGCCAACTTTAATTTCCCCGACAACCCGCCGGACATCCCCGGCGGCGGTTCCCTCACGTCCTCCCAAATTCAGATCGCCGCCGCTCGTTTTGCCAATTCGGAGTCCCACAATAACACCTCCGACTCTAACTCCACCCGATTTCCAATGGAATCTTCATCCCCTATGTCGGAGGGGACGCCCTTGCCTATGGAATCTCCGTCGTCGTCTCCGTCTGAAGGGACGGTCCCAACGGACAGTGAAATCACACTCAACGACCCGTTTAGTGATTTGTTTTCATTTGGTTCGGGAAATTACACATCCGATTACGGAATATTCCCGGGTTTTGACGATTTGAGCAGTGGTTTGTACGCGCCGGAACTGCCGAAGGATGATTATGGAGAGCAAAACACAGATGATGTGATAATTCAGGACTCATTCCTGTGGAATTTCTAA	642	0.528	MVKHGPEKNERAAEGSESKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAAMFCLRGRNANFNFPDNPPDIPGGGSLTSSQIQIAAARFANSESHNNTSDSNSTRFPMESSSPMSEGTPLPMESPSSSPSEGTVPTDSEITLNDPFSDLFSFGSGNYTSDYGIFPGFDDLSSGLYAPELPKDDYGEQNTDDVIIQDSFLWNF	213

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa02g0577	213	ProSiteProfiles	AP2/ERF domain profile.	19	76	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0577	213	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	12	137	-	-
	Bisa02g0577	213	Pfam	AP2 domain	18	68	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0577	213	PRINTS	Ethylene responsive element binding protein signature	20	31	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0577	213	PRINTS	Ethylene responsive element binding protein signature	42	58	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0577	213	SMART	rav1_2	19	82	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0577	213	FunFam	Ethylene-responsive transcription factor 2	18	77	-	-
	Bisa02g0577	213	Gene3D	AP2/ERF domain	18	77	IPR036955	GO:0003700\|GO:0006355
	Bisa02g0577	213	CDD	AP2	18	78	IPR001471	GO:0003700\|GO:0006355
	Bisa02g0577	213	MobiDBLite	consensus disorder prediction	101	151	-	-
	Bisa02g0577	213	MobiDBLite	consensus disorder prediction	1	23	-	-
	Bisa02g0577	213	SUPERFAMILY	DNA-binding domain	18	77	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa02g0577	Bisa-ChrBisa02	10032042	10032683	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa02g0577	17	213	AP2-EREBP Transcription Factor Family	AT1G19210	51.485	3.98e-58	180

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa02g0577		AP2	4.2e-13	CL0081