Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0527 ATGACGATTGACGACGAGAGCTCCATATATGTTGGAGGTCTTCCCTACGATGCCACCGAAGACACCATTCGCACTGTCTTTGATTTATATGGCGCCATTGTTGACATCAAGATTATTAATGATCAACGGACTAGGGGCAAGTGCTATTGTTTCGTTACTTTCACAAATCCTCGATCAGCAATAGATGCAATCAATGACATGAACGGCAGAACCATTGATGGGCGTGTGGTTAAAGTAAATGGGGTGAGATCTCGAGGTGGAAGATCAAATTTTGGTAGAGAACATGTTCATCATAATATTGAGAGGAATGGAGACTGGGATCGTGGTAGAGATCGAGACAGAGATTATGATCGTGATAAGGAAGGATATAGGAATCGAAATAGGGATTGGTCTCGAGATCGTGATAGGTCTCGAGAGCATGATAGGTCCCGAGACTTTGAGCATGACGAGGATAGAAGATACGAACATAGACATTATTATGATCAAGCAAGAGAACCTGTGCTAGATAAAGATCGAAGTCAAGAAGGACATCAGGCAGATAATGAACAAGAACACAGCAGAGCACATTGTCAAGCTACAGAAAGAGACTATAACTTAGATTTGAATACAGACAGGAACGTGGATAGGACTAATGATCCTGACAGAAGTTTTGATGGGGATAGAAATGAGAATGCAAGGAGAAACAATGGATCGAGTATTATGAGACAACATAGCATGGATTTTTCATCAGAATCAAATGGTAATCACAATGATCAGATTGAAGATCAATTAGAGAGGTCAAATCAAAGGCTTAGTCAACTGAAAGAGGAGGTTTCTCAAATGGAAGAGAAGTTGGAAGAGAAACGACTTCTTGTTATGGATTTACAAAACCATTCTAGGAATCTGGAGGATGCATTAATTAATGCAAAGAAACACTCTTCCTATCGTCAGATGCAGTTAACCAAGCTGCACAAATGTTATCTACAAGTGAAAGATTACACAGAGAGACTTAAAAGCTGCGAAAAGGAACTTCAGGCTCTGGTTGATACAGCAATGTTAGAGAATGATACTGATGGTGTTGGCTTAAAGGATGGACCATACACAAACGGAAATGAATTATCTCTGTAG 1107 0.4011 MTIDDESSIYVGGLPYDATEDTIRTVFDLYGAIVDIKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVVKVNGVRSRGGRSNFGREHVHHNIERNGDWDRGRDRDRDYDRDKEGYRNRNRDWSRDRDRSREHDRSRDFEHDEDRRYEHRHYYDQAREPVLDKDRSQEGHQADNEQEHSRAHCQATERDYNLDLNTDRNVDRTNDPDRSFDGDRNENARRNNGSSIMRQHSMDFSSESNGNHNDQIEDQLERSNQRLSQLKEEVSQMEEKLEEKRLLVMDLQNHSRNLEDALINAKKHSSYRQMQLTKLHKCYLQVKDYTERLKSCEKELQALVDTAMLENDTDGVGLKDGPYTNGNELSL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0527 368 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 197 - -
Bisa02g0527 368 CDD RRM_SF 9 80 - -
Bisa02g0527 368 MobiDBLite consensus disorder prediction 102 225 - -
Bisa02g0527 368 Coils Coil 323 343 - -
Bisa02g0527 368 MobiDBLite consensus disorder prediction 102 234 - -
Bisa02g0527 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Bisa02g0527 368 SMART rrm2_1 8 80 IPR003954 GO:0003676
Bisa02g0527 368 SUPERFAMILY RNA-binding domain, RBD 4 110 IPR035979 GO:0003676
Bisa02g0527 368 Coils Coil 250 298 - -
Bisa02g0527 368 PANTHER GEO13361P1-RELATED 6 201 - -
Bisa02g0527 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Bisa02g0527 368 Gene3D - 2 97 IPR012677 -
Bisa02g0527 368 SMART rrm1_1 8 80 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0527 Bisa-ChrBisa02 9179594 9183342 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0527 3 79 Eukaryotic Initiation Factors Gene Family AT2G36660 32.468 8.98e-08 52.0