Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0492 ATGGTGGGTCCACGGGATATTGGATTCCATTGCAGTTTTCCACCGCGCCTCTTCCCCTGGATATGTTCTTCTGCAATAATGCATAGGAATCATGTAAAGAAGGGCACAAGAGGGGCTTTAGATGGGGAAAAAATCTGCGGAGAAATGAGCTACCCTGGAGGAGATTGGATGTGTGGTGCTTGCCAGCACGTTAATTTCAAGAGGAGAGATGCATGCCAACGTTGTGGGTACCCCAAGTTTGGAGGGCCTGACACATCAACTTATGAAAGCATCAATAGGAACACTGAAGCATTGGCAGGGGACTGGTTTTGCACTTCCATGAACTGCGGAGCTCACAACTACGCCAGCCGATCAACTTGCTATAAATGTGGTGCACTGAAAGATGATTATACCTATGGATATGGGGGAAACATGGTGAGCTCTCGAGGATATGGATCTGGTTGCAGTTTACCCGCTGGATGGAAGCCTGGGGATTGGATTTGCTCTAGATTTGGCTGTGGAGTGCATAATTATGCTAGTAGGACAGAATGCTTCAAATGCAAAACACCAAGGGATTATGGTGAGAAAAGTGTAGTCATCACAACTTACTCCTTTAATCTTAGAAAAAACTTCCACATGATGTTGTCACTTATTAGTAAAAGCTGGTCAACGCCAGATTCGATTAATCTCTTCTCCGAGAATTTCGCTATGAGTTTTCCGGATCATTCCTCTGGGTTCATGCTGTCGCCGCCGCCATTTGCCGCGGAGGACGATTCCAATGGTGGGTGGCCACAGTTTCCAATCAACAACAACGAACACTTCGATCCACATTCAACATTTGATCATCTTCCTTCGTTCAAGAGACCCAGGACTTCCGAGACCGACCAGTTCAATCCCTTGTCATTCCCACCAATCAATTCCAGGATGCACCACCCTCAAAATCCTCCATCTAATAGGGGAGGGACGAGCCACATTTTCTTCAAGACCCGAATGTGTGCGAAATTCAAAATGGGTATGTGCAGGAACGGCGAGAATTGTAACTTTGCACATGGCATTGAAGATATGAGGCAGCCACCTCCAAATTGGCAGGAACTTGTAGGCTTGCGTGAAGAAGAACGGCCATCTGGAAATTGGGATGATGACCAGAAAATCATACATAAGATGAAGCTGTGCAAGAAGTATTATAATGGAGAGGAATGTCCTTATGGCGAAAGGTGCAATTTTCTTCATGAGGATCCGTCCAAGTTCAGGGACGATGCTGGAAGGTGTAGGGAGAGCTCAGCAATAAGCCTTGTGGCTAATGGATCGCCAAAGTCGCACTTGAATGGCTCTAGTAATTCAGATAGTAATAGGGCTGTGAATACAGGGTGTGATGCTTCTCGATCAAATACGAAGGCTCCATTTTGGAAGACCAAAATATGTTCCAAGTGGGAGTTAACTGGACAATGCCCTTTTGGTGATAAATGTCACTTTGCACATGGACAAGCAGAGCTACAAGTGCCTGTTGGGCGCATAGAATCAGAAGCTACAGGCTCTTATCCAGTTTCAACAAGAGCTACATCGGTGCCTGTGAATGATGTAGCTCCTACCATCACTGCAACTCTTCCTGATTCAAATGAAGAGGAGCAGATTAAGAAGAATCTGCTGAAGTGGAAAATAAACAAGAAGGTCAATCGAATTTATGCGGATTGGCCTGATGATTTACCATCGCCAAGAAACTTGGAAGGTCAGAATTCAGAGCTACGTTCTGAGGAAGTTTTGTGCGCAGGCTATAGACAGCTACTACTTACCTTCCATTTCTCTTCCTTCAACACTGACCGATGGGAGAAGATGGTTGAGCTCCTTCGCTTTCCTTCTTCCTTTACCGTCTCCTCCACGATTCCTGTCTCTAACGAAGTCTCTCTTCAACCCTTGACTCCATCAAGAGCATTTTCACCGTATAAGCCTTCCCCTCCTTCTATATCCATGAAGTTGCACCCTCATGCCTTCGCAGGAAATCCAGTAATATCCAAATCCCCGAAACCCGGTGACCCATTTGCACCCACAGGAGCACTTGAATCGCTGAAATTTCGACTTTCAACGGACACTCAACCTTCATCCTCCCCAAATTTCATGGTGTTGCCTTTCAGAAATGGGATGCCCTTAGCCTCTTCGACTACTGAGTCCAGTGACTCCCTGCCAATTTGGAATCTGGGTTGGGTCAATTTGGATGATCTGACGGGGATTTTGAAAAATTCTGGTGTACAATTGAGCGGAGACTCGTTAGTGTATCTGGGTTCGTGTTCAGAGGACGATGTCGTTTACTGGGCAATTGACGTTTCTTCTGAGCGTAGCTTCGTTCCTGAATTAGGAAGGAAGAACTTCTGCTTTGTGGATTTGAGATCGCTCATGGTGGCCACCGATTGGTCGGACTTGCAAGTGGCAGGGAACTTAGCTATTGCTGGTCATGCCAGGGCACTGCTAGAATGGCATAATGTATCACGATATTGTGGACATTGTGGAGAGAAAACAGTCAATCTAGAAGCTGGGAAGCGAAAGCAATGTTCAAACGAATCATGCAGAAAGAGAATATATCCCCGTGTTGACCCGGTGGTCATTATGTTAGTTATTGATCGAGAGAATGACCGCATCCTTTTGGGTAGAAAGTCAAGTTTTGTACCAAGAATGTGGAGCTGCTTGGCTGGTTTCACAGAGCCAGGAGAAAGCTTAGAGGAGGCTGTGAGAAGAGAAACATGGGAAGAGACAGGTGTTGAAGTAGGAGAAGTTGTATTTCACAGTTCTCAGCCATGGCCTGTTGGATCAAATAGCATGCCATGCCAGCTGATGGTTGGGTTCTTTGCATATGCAAAATCCCTTGAAATAAATGTGGACAAGAGAGAGTTAGAAGATGCTCAGTGGTACAGTAGAGAAGCTGTAAGAAAAGCTTTGACAGTTGCAGAGTACAAGAAAGCACAAAGAAATGCAGCAACAAAGGTAGTACAAATGTGCAAGGGAGTAGAAAAAAGTCACAGCTTGACTACAGATTATAATATGGAAAGTGGTGAACTTGCTTCCATGTTTTTTCCTGGACCCCATGCTATAGCTCATCGCCTTATTTCCACTTGGGCCTTCCAAGATGTACCCAATGGCGCTGATTGCCATTGA 3123 0.4557 MVGPRDIGFHCSFPPRLFPWICSSAIMHRNHVKKGTRGALDGEKICGEMSYPGGDWMCGACQHVNFKRRDACQRCGYPKFGGPDTSTYESINRNTEALAGDWFCTSMNCGAHNYASRSTCYKCGALKDDYTYGYGGNMVSSRGYGSGCSLPAGWKPGDWICSRFGCGVHNYASRTECFKCKTPRDYGEKSVVITTYSFNLRKNFHMMLSLISKSWSTPDSINLFSENFAMSFPDHSSGFMLSPPPFAAEDDSNGGWPQFPINNNEHFDPHSTFDHLPSFKRPRTSETDQFNPLSFPPINSRMHHPQNPPSNRGGTSHIFFKTRMCAKFKMGMCRNGENCNFAHGIEDMRQPPPNWQELVGLREEERPSGNWDDDQKIIHKMKLCKKYYNGEECPYGERCNFLHEDPSKFRDDAGRCRESSAISLVANGSPKSHLNGSSNSDSNRAVNTGCDASRSNTKAPFWKTKICSKWELTGQCPFGDKCHFAHGQAELQVPVGRIESEATGSYPVSTRATSVPVNDVAPTITATLPDSNEEEQIKKNLLKWKINKKVNRIYADWPDDLPSPRNLEGQNSELRSEEVLCAGYRQLLLTFHFSSFNTDRWEKMVELLRFPSSFTVSSTIPVSNEVSLQPLTPSRAFSPYKPSPPSISMKLHPHAFAGNPVISKSPKPGDPFAPTGALESLKFRLSTDTQPSSSPNFMVLPFRNGMPLASSTTESSDSLPIWNLGWVNLDDLTGILKNSGVQLSGDSLVYLGSCSEDDVVYWAIDVSSERSFVPELGRKNFCFVDLRSLMVATDWSDLQVAGNLAIAGHARALLEWHNVSRYCGHCGEKTVNLEAGKRKQCSNESCRKRIYPRVDPVVIMLVIDRENDRILLGRKSSFVPRMWSCLAGFTEPGESLEEAVRRETWEETGVEVGEVVFHSSQPWPVGSNSMPCQLMVGFFAYAKSLEINVDKRELEDAQWYSREAVRKALTVAEYKKAQRNAATKVVQMCKGVEKSHSLTTDYNMESGELASMFFPGPHAIAHRLISTWAFQDVPNGADCH 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0492 1040 Gene3D - 314 350 - -
Bisa02g0492 1040 Gene3D - 376 407 - -
Bisa02g0492 1040 Gene3D - 454 493 - -
Bisa02g0492 1040 FunFam Nudix hydrolase 19, chloroplastic 853 1032 - -
Bisa02g0492 1040 PANTHER NUDIX HYDROLASE, NUDC SUBFAMILY 670 1031 - -
Bisa02g0492 1040 Pfam RNA-binding, Nab2-type zinc finger 325 344 - -
Bisa02g0492 1040 SUPERFAMILY Ran binding protein zinc finger-like 97 129 IPR036443 -
Bisa02g0492 1040 MobiDBLite consensus disorder prediction 427 446 - -
Bisa02g0492 1040 SUPERFAMILY Nudix 805 975 IPR015797 -
Bisa02g0492 1040 Gene3D - 713 852 - -
Bisa02g0492 1040 SUPERFAMILY Ran binding protein zinc finger-like 49 81 IPR036443 -
Bisa02g0492 1040 Gene3D - 90 129 - -
Bisa02g0492 1040 Gene3D - 47 83 - -
Bisa02g0492 1040 Gene3D - 152 186 - -
Bisa02g0492 1040 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 853 1029 - -
Bisa02g0492 1040 ProSitePatterns Zinc finger RanBP2-type signature. 159 180 IPR001876 -
Bisa02g0492 1040 FunFam Nudix hydrolase 19, chloroplastic 712 852 - -
Bisa02g0492 1040 SUPERFAMILY CCCH zinc finger 460 492 IPR036855 GO:0046872
Bisa02g0492 1040 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
Bisa02g0492 1040 ProSiteProfiles Zinc finger RanBP2 type profile. 52 81 IPR001876 -
Bisa02g0492 1040 SUPERFAMILY Ran binding protein zinc finger-like 152 186 IPR036443 -
Bisa02g0492 1040 Pfam NADH pyrophosphatase-like rudimentary NUDIX domain 700 816 IPR015375 GO:0016787
Bisa02g0492 1040 ProSiteProfiles Zinc finger C3H1-type profile. 319 346 IPR000571 GO:0046872
Bisa02g0492 1040 SMART c3hfinal6 378 405 IPR000571 GO:0046872
Bisa02g0492 1040 SMART c3hfinal6 461 488 IPR000571 GO:0046872
Bisa02g0492 1040 SMART c3hfinal6 319 345 IPR000571 GO:0046872
Bisa02g0492 1040 SMART zf_4 54 78 IPR001876 -
Bisa02g0492 1040 SMART zf_4 100 126 IPR001876 -
Bisa02g0492 1040 SMART zf_4 157 183 IPR001876 -
Bisa02g0492 1040 Pfam NUDIX domain 857 971 IPR000086 -
Bisa02g0492 1040 ProSiteProfiles Zinc finger C3H1-type profile. 378 406 IPR000571 GO:0046872
Bisa02g0492 1040 ProSitePatterns Zinc finger RanBP2-type signature. 56 75 IPR001876 -
Bisa02g0492 1040 FunFam Zinc finger CCCH domain-containing protein 456 493 - -
Bisa02g0492 1040 Pfam Zn-finger in Ran binding protein and others 99 127 IPR001876 -
Bisa02g0492 1040 Pfam Zn-finger in Ran binding protein and others 155 184 IPR001876 -
Bisa02g0492 1040 CDD NADH_pyrophosphatase 856 1031 - -
Bisa02g0492 1040 ProSiteProfiles Zinc finger C3H1-type profile. 461 489 IPR000571 GO:0046872
Bisa02g0492 1040 ProSiteProfiles Nudix hydrolase domain profile. 852 982 IPR000086 -
Bisa02g0492 1040 SUPERFAMILY CCCH zinc finger 317 350 IPR036855 GO:0046872
Bisa02g0492 1040 ProSiteProfiles Zinc finger RanBP2 type profile. 155 186 IPR001876 -
Bisa02g0492 1040 FunFam Zinc finger CCCH domain-containing protein 39 375 407 - -
Bisa02g0492 1040 ProSitePatterns Nudix box signature. 888 909 IPR020084 GO:0016787
Bisa02g0492 1040 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
Bisa02g0492 1040 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 380 403 IPR000571 GO:0046872
Bisa02g0492 1040 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 462 488 IPR000571 GO:0046872
Bisa02g0492 1040 SUPERFAMILY CCCH zinc finger 378 405 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0492 Bisa-ChrBisa02 8452643 8466061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0492 461 497 C3H Transcription Factor Family AT1G68200 56.757 6.13e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa02g0492 NUDIX 6.5e-16 CL0261