Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0317 ATGGGTTTTGGAGCATTTGGTTCTATCGTAGTTCTGACCTTTTTCTTCAAGCATTTGGCTTGCCAGCCAAACACTGATAATTCCTATGTGTCTGACTTCTTGAGGAAAATGGGTTTAGCATCTTCTTCCCAAGCCTTCTTCAACTTCTCTGGTTCTGTTTGTTCATTGCCAGTGGTTCATTGTGATGCCAACAAAGAACATGTTATCGCCTTGATGGCTTCTGGCATGGGCCTCTCTGGCCCAATTCCTGAAAACACCATTGGCAAACTCAGCAAGCTTCAAATTTTGAATCTCAGCAACAACAACATCACCGCCTTGCCTTCTGATTTCTGGAGTTTAAGCTCACTGAAGACTCTTAACCTCTCCTCCAATCAGATTTCAGATTCACTGGCCAACAATTTCGGCAACTTTGGTGTCCTTGAAACCTTTGATTTATCCTATAACAATATTTCTGGGAATATTCCTGAAGCCATTAGCTCCCTTGTGAATTTGAAAACCCTCAAACTAGACCATAACAGATTTGAACAGAACGTACCTTCAGGGATTCTCAAGTGTCAGTCTCTTGTGTCAGTTGATCTTTCATCTAATCAGCTTAATGGGACTCTTCCTGATGGCTTTGGAGCTGCTTTTCCCAAGCTAAAAACCTTGAATCTTGCAGGGAACAATATTCATGGTCGTCGTTCAAAATTTTCAGGGCTCAAATCCATTACTAGTCTCAACATATCTGGAAATTCCTTTCAGGGTTCTATCATCGGTATGTTTCAGGAACAGTTGGAGGTCATTGACTTTAGCAGGAACCAGTTTAAAGATCACATTCAGGTAAAGTTCATCTCTAAACATAACTGGTCTCATTTGGTGTATCTGGATTTGTCTGAGAATAGACTTAGTGGGGAAATCTTCCAAAATTTGAATGAAGCCCAGAATCTTACACATCTTAATCTGGCACACAATAGATTTTCCATGCAGAAGTTTCCACAAATTGAAAAGCTCTCAAGATTGGAATATCTGAACTTGTCCAAAACTAGTCTGATTGGTCACATTCCTGCTGAAATATCGCAGCTGAGTAATTTGAATGCACTTGATATTTCTATGAATAATCTTTCAGGGAGAATTCCATTTCTGAGGAGTAAAAACCTCCAAGTTCTTGACCTCTCAAAGAACAATTTCAGTGGAGAAATTCCACCATCGTTGTTGGAGAAACTCCCTCAGATGGAGAAATATAACTTCTCTTATAATAACTTGACCTTCTGTTCTTTGGGAATCAACCCTAATATCCCGCAAACAGCATTCATTGGATCATCAGACAGTTGCCCAATTGCTGCAAACCCTAGTCTTTTCAAAAGAAGGGCCTCTGAGAAAAAGGGAATGACACTAGCTCTGGCATTGACTCTTTCATTGATCTGCCTACTTTGTGGGCTTCTGTTTCTTGCATTTGGTTGCAGAAGGAAAACCAATTTATGGGCAGTTAAGCAACCTTCATACAAAGAAGAACAGGCCATTTCGGGTCCCTTCTCATTCCAGACTGATTCAACTACCTGGGTGGCTGATGTTAAGCAAGCAAATTCAGTCCCAGTAGTGATCTTTGAAAAGCCATTACTGAACATTACATTTGCAGATCTCTTGTCCTCAACTTCAAGTTTCGATCGGGGCACCCTTTTGGCTGAAGGGAAATTTGGGCCTGTTTACCGAGGCTTTCTACCTGGTGGCACTCAAGTAGCAGTTAATGTTCTGGTTGTTGGGTCTACATTGACAGATCAAGAAGCTGCAAAGGAGCTCGAGTATCTCGGCCGAATCAAGCACCCCAATCTTGTTCCTTTAACTGGATACTGCTTTGCTGGGGATCAAAGGATTGCCATATATGATTACATGGAGAATGGGAACCTGCAAAACTTGCTTCATGACTTGCCAGTTGGACTACAAAGGACAGATGATTGGAGCACGGACACATGGGAAGAAGCAGAGGGTGAGAATGGGATTCATCACAGTGCTGGCTCTGAGGGACAATTGCTCACATCTTGGCGATTTCGCCACAAAATCGCCCTTGGTACTGCCAGAGCATTAGCATTTCTGCATCATGGTTGCTCACCTCCAATTATTCACAGAGATGTTAAAGCTAGCAGTGTCTACTTGGATTATAACTTAGAGCCAAGGTTGTCTGATTTTGGTCTTGCCAAGATTTTTGGAAGTGGCTTAGATGAGGAAATCGCACATGGCTCGCCCGGCTACATTCCACCGGAGTCTTCTCAACCTGATTTTGACTCCCCAACTCCAAAATCTGATGTCTACTGTTTTGGGGTTGTCCTCTTTGAGCTAGTAACCGGAAAAAAACCAGTTGCAGATGATTATCCCGAAGAAAAGGAAGCAAATTTGGTGAGCTGGGTGAGAGGACTGGTAAGAAAGAACTTAGCTTCAAGAGTTATTGATCCAAAAATTAGTGATACAGGACTTGAGGATCAAATGGTGGAAGCCCTAAAGATTGGATATCTGTGCACTGCTGATCTTCCCTCTAAAAGACCTAGCATGCAGCAGATAGTGGGACTTCTTAAAGATATTGAGCCTTCTGCTAGTTAG 2571 0.4224 MGFGAFGSIVVLTFFFKHLACQPNTDNSYVSDFLRKMGLASSSQAFFNFSGSVCSLPVVHCDANKEHVIALMASGMGLSGPIPENTIGKLSKLQILNLSNNNITALPSDFWSLSSLKTLNLSSNQISDSLANNFGNFGVLETFDLSYNNISGNIPEAISSLVNLKTLKLDHNRFEQNVPSGILKCQSLVSVDLSSNQLNGTLPDGFGAAFPKLKTLNLAGNNIHGRRSKFSGLKSITSLNISGNSFQGSIIGMFQEQLEVIDFSRNQFKDHIQVKFISKHNWSHLVYLDLSENRLSGEIFQNLNEAQNLTHLNLAHNRFSMQKFPQIEKLSRLEYLNLSKTSLIGHIPAEISQLSNLNALDISMNNLSGRIPFLRSKNLQVLDLSKNNFSGEIPPSLLEKLPQMEKYNFSYNNLTFCSLGINPNIPQTAFIGSSDSCPIAANPSLFKRRASEKKGMTLALALTLSLICLLCGLLFLAFGCRRKTNLWAVKQPSYKEEQAISGPFSFQTDSTTWVADVKQANSVPVVIFEKPLLNITFADLLSSTSSFDRGTLLAEGKFGPVYRGFLPGGTQVAVNVLVVGSTLTDQEAAKELEYLGRIKHPNLVPLTGYCFAGDQRIAIYDYMENGNLQNLLHDLPVGLQRTDDWSTDTWEEAEGENGIHHSAGSEGQLLTSWRFRHKIALGTARALAFLHHGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEEIAHGSPGYIPPESSQPDFDSPTPKSDVYCFGVVLFELVTGKKPVADDYPEEKEANLVSWVRGLVRKNLASRVIDPKISDTGLEDQMVEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPSAS 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0317 856 Gene3D Ribonuclease Inhibitor 181 275 IPR032675 -
Bisa02g0317 856 CDD STKc_IRAK 553 851 - -
Bisa02g0317 856 FunFam Putative LRR receptor-like serine/threonine-protein kinase 508 622 - -
Bisa02g0317 856 SUPERFAMILY L domain-like 46 419 - -
Bisa02g0317 856 Gene3D Transferase(Phosphotransferase) domain 1 623 856 - -
Bisa02g0317 856 SMART LRR_typ_2 161 185 IPR003591 -
Bisa02g0317 856 SMART LRR_typ_2 113 136 IPR003591 -
Bisa02g0317 856 SMART LRR_typ_2 210 232 IPR003591 -
Bisa02g0317 856 SMART LRR_typ_2 330 354 IPR003591 -
Bisa02g0317 856 SMART LRR_typ_2 90 112 IPR003591 -
Bisa02g0317 856 SMART LRR_typ_2 377 400 IPR003591 -
Bisa02g0317 856 FunFam Calmodulin-binding receptor kinase CaMRLK 255 373 - -
Bisa02g0317 856 SUPERFAMILY Protein kinase-like (PK-like) 523 848 IPR011009 -
Bisa02g0317 856 Pfam Protein tyrosine and serine/threonine kinase 551 846 IPR001245 GO:0004672|GO:0006468
Bisa02g0317 856 Pfam Leucine Rich Repeat 378 398 IPR001611 GO:0005515
Bisa02g0317 856 Gene3D Ribonuclease Inhibitor 375 454 IPR032675 -
Bisa02g0317 856 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 107 202 - -
Bisa02g0317 856 Gene3D Ribonuclease Inhibitor 34 180 IPR032675 -
Bisa02g0317 856 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Bisa02g0317 856 PRINTS Leucine-rich repeat signature 285 298 - -
Bisa02g0317 856 PRINTS Leucine-rich repeat signature 354 367 - -
Bisa02g0317 856 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 140 250 IPR046959 -
Bisa02g0317 856 Gene3D Ribonuclease Inhibitor 276 374 IPR032675 -
Bisa02g0317 856 SMART serkin_6 547 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa02g0317 856 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Bisa02g0317 856 ProSiteProfiles Protein kinase domain profile. 547 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa02g0317 856 Pfam Leucine rich repeat 83 126 IPR001611 GO:0005515
Bisa02g0317 856 Pfam Leucine rich repeat 187 245 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0317 Bisa-ChrBisa02 5482838 5485408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0317 63 852 Receptor kinase-like Gene Family AT4G39400 34.649 4.70e-114 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Bisa02g0317 PK_Tyr_Ser-Thr 5.3e-30 CL0016