Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0178 ATGGACTCTTCCTCCTCCTCCTCTCCCCACTCGCAGACCCAGTCTTGGCTCGCTTTCTCTCTTTCTAACCCCTTGCCTTCCTCCTCCCCCTTCCCCCTTTTCCCCTCAACCTCCCCCACCCCCACCATCTCTCTCACAGGTTGCAGCACCGTCAACGCGTCGCCGGGAGTGAGGGATGGGGCGGCCGGAGGAGGTCCGACGGGTGTCTCTGTGCTTACCGGGGGGCCCAAGTTCGAGGACTTTCTCGGAGGCGGTGGCTCCTCCGCTGCCACCGCAGTCGCCTCCACCACCGCACCAGCACCGCAGTTCTCCGCCGATAACGCCCTTACCACAGTGGTGGAGAGCGAGATATACGATTCTGAGCTGAAGACGATAGCCGCCAGCTTCCTCCGCGGCTTCGCCTCCGGAGGCCAAGCCGAACAGCAACAGAAACAGGCGCTGGCTCCAGCCGAGCCGTCCCCCAAGAAGACCGTCGACACCTTCGGCCAACGCACCTCCATCTACCGCGGCGTCACACGGCATAGATGGACGGGAAGATACGAAGCTCATCTATGGGACAACAGTTGCAGAAGGGAAGGGCAAAGCAGGAAAGGAAGACAAGGTGGCTACGATAAGGAAGAGAAGGCAGCCAGAGCCTATGATCTTGCAGCTCTCAAGTACTGGGGTCCGACCACCACCACCAACTTCCCTGTAAGCCATCTTGCAGCTTATGATCTTTGTTATTTCTTGTTCACGTACAATTCTTGTCTTATTCAACACCCTGAAATCTCGCTCGCTCGCTCTCTCTTTCTCTCTCGGGTAGATTTCGAACTATCAGAAGGAACTGGATTCAATGAAGAACATGACAAGGCAGGAATTTGTTGCTTCTCTTCGAAGTTTAATGGACTTTTTGGCGTTTCTTTATTTTATTACAGGAAGAGTAGTGGTTTCTCCAGAGGCGCCTCGATATATAGAGGAGTGACGAGACATCACCAGCATGGCCGTTGGCAGGCAAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACTTTCAGTACACAAGAGGAAGCGGCGGAGGCATATGACATAGCAGCCATAAAATTCCGAGGGTTGAATGCAGTGACCAACTTTGACATGAGTCGCTACGACGTGAAGAGCATTGCCAACAGCAGCCTCCCCATCGGAGGATTATCCAGCAAGACCAAAACATCCAATGATTCTGTATCGGATCAGAGCAAGATCAGCCACGACGGAGGTCGATCGGACGATCTCTCGTCGCCGAACTCCTCGGTAACATTTGCATCCCAGCCACCACCACCTTCGAGCTCCCCTGCGTCTCTCAGCTTCGCGATACCCATCAAACAAGACGCATCAGATAATTACTGGTCTTCCGTTCTTGCTGGGTACAACAAGAATCCTTCGTTCCAGTCATCTTCCACCAATGCTTCTGTGACATCTGTCTTGCCCTTCAACCTGGAGTTCTCAACACATACGAGCAGCGAGAGCAATAATAATGATAATACTGGTAACAATAATAATAATAATAATAATGCTTTTTTCAGCGGAGGCATGTTTGGTCAGCAACAAAGTGGAGGCAATAGTGGTGGTGTTTCTGGTTCTGGTTCTGGTTCTGGTTCGAGCTCATTGATTCCATTGGGCACGCCCATTGCTTTAAATAGTAATAGTAGTTATGAGAATTCTTCTGGATATGGAAACTGGAGTATTGGGCCTACCCTGCACACCTTCCAAACCCATGCAAAACCGAGTCTCTTTCAAACCCCAATTTTCGGCATTGAATGA 1788 0.5168 MDSSSSSSPHSQTQSWLAFSLSNPLPSSSPFPLFPSTSPTPTISLTGCSTVNASPGVRDGAAGGGPTGVSVLTGGPKFEDFLGGGGSSAATAVASTTAPAPQFSADNALTTVVESEIYDSELKTIAASFLRGFASGGQAEQQQKQALAPAEPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSHLAAYDLCYFLFTYNSCLIQHPEISLARSLFLSRVDFELSEGTGFNEEHDKAGICCFSSKFNGLFGVSLFYYRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSSLPIGGLSSKTKTSNDSVSDQSKISHDGGRSDDLSSPNSSVTFASQPPPPSSSPASLSFAIPIKQDASDNYWSSVLAGYNKNPSFQSSSTNASVTSVLPFNLEFSTHTSSESNNNDNTGNNNNNNNNAFFSGGMFGQQQSGGNSGGVSGSGSGSGSSSLIPLGTPIALNSNSSYENSSGYGNWSIGPTLHTFQTHAKPSLFQTPIFGIE 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0178 595 MobiDBLite consensus disorder prediction 393 408 - -
Bisa02g0178 595 Gene3D AP2/ERF domain 316 376 IPR036955 GO:0003700|GO:0006355
Bisa02g0178 595 Gene3D AP2/ERF domain 167 232 IPR036955 GO:0003700|GO:0006355
Bisa02g0178 595 SMART rav1_2 167 236 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 SMART rav1_2 316 380 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 Pfam AP2 domain 167 222 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 Pfam AP2 domain 316 366 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 120 472 - -
Bisa02g0178 595 FunFam AP2-like ethylene-responsive transcription factor 315 376 - -
Bisa02g0178 595 PRINTS Ethylene responsive element binding protein signature 212 232 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 CDD AP2 166 232 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 ProSiteProfiles AP2/ERF domain profile. 167 230 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 MobiDBLite consensus disorder prediction 393 443 - -
Bisa02g0178 595 CDD AP2 315 376 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 ProSiteProfiles AP2/ERF domain profile. 316 374 IPR001471 GO:0003700|GO:0006355
Bisa02g0178 595 MobiDBLite consensus disorder prediction 492 542 - -
Bisa02g0178 595 FunFam AP2-like ethylene-responsive transcription factor ANT 166 232 - -
Bisa02g0178 595 SUPERFAMILY DNA-binding domain 166 232 IPR016177 GO:0003677
Bisa02g0178 595 SUPERFAMILY DNA-binding domain 315 376 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0178 Bisa-ChrBisa02 2793041 2796122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0178 115 469 AP2-EREBP Transcription Factor Family AT5G57390 56.164 7.99e-123 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bisa02g0178 AP2 1.2e-09 CL0081