Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g0080 ATGCACCCCATGGACGCTGTCTTCTCCCTCCCTGAACCTGCCAGGGCTAACTTCCTGCATTCTATACTGAACTCTTGTGGCTGCTCTTACATTTGCCTTTGGTCCTATCAATATGATTCCCTTTTATCCTCCAATCATTTGCGGTTCTTGGATGGTTTGTTCAACGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGCAACAACGGGGAAATTGAGCTTGGCTTCTCCAACATGTCTCAAGCTGATATTCAAACGGCACTTAGGAATTTATTCCCAGATGAATTTCCAATATCACAATCCCAGCAGCCAAACATTGATCAAAATCAGAATCCGCCTTCATCATCTTCATCTTCTCTAAGATCACTATCAGTATCCACAGGCAGCCCTGAATACTCGTCCCTGCTATTCAGCATTCCTGCGGTCTCTTCTTCCCAATTTCCTCCAGAACAAGCCATCCAGGCGCTAGCCCAGGCTACACAGTCACAGACCCCATTCCCAACCCCAGAGAGTGATCATGATGCCATCATGAGAGCAATCCTTCATGTAATTTCTAATTCACCTTCTTCTTCTTCAACCTCTCTTCATCATCACCAGAACCAGAACCAGAGTTTGCCTTATAAGGCTAGTGCTTTCAAGAGGTATAACCCCACCATCACCTGCCAAATGGGGTCTGATTTGCGCAGCCAAAGCTTGTTTAAGAGGTCTCTGACATTCTTTAGAAGCTTGAACTTCATGAGAATGAGAGAACGCGCTCAAACAACTCGCCCCACTACTAGTACCCAGGTTCATCACATGATTTCTGAGAGGAGGAGGCGTGAGAAGCTCAATGAGAACTTTCAGGCTCTTAGATCACTGCTTCCTCCTGGAACCAAGAAAGACAAAGCATCGATACTCACAACAGCAAAGGAGACACTGAGCTCATTAATGGCGAAGATTGAAAAGGTTAAAGAAAGAAACAAGCAGTTAGAGGCGTCATCATCATCAATGGCTGCTCCAGCCAAAGAAGCCAGTAGTAGTACTGATCATGAACCCTCAAATCTAAGGTTAAGTGTTCGAGTTTCACATGAACCAGAATCAAGATCAGCAGAAGCCAGGATCGTAGACTTGGAAGTGATTGTGAGAGGACAAAGCTCTCAAGTTGATATTCTGATTCGGTTACTGGGATTCCTAAAGCAACATCAAAACTTGAGCTTGATTTCAATGGGAGCTAACACCCATTTAGCACAAGGGACTTCCTTTAATCGAGTAACCTTAAGACTACGGATTGAGGGAAGTGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTGA 1341 0.4519 MHPMDAVFSLPEPARANFLHSILNSCGCSYICLWSYQYDSLLSSNHLRFLDGLFNEARIKTAVFMGCNNGEIELGFSNMSQADIQTALRNLFPDEFPISQSQQPNIDQNQNPPSSSSSSLRSLSVSTGSPEYSSLLFSIPAVSSSQFPPEQAIQALAQATQSQTPFPTPESDHDAIMRAILHVISNSPSSSSTSLHHHQNQNQSLPYKASAFKRYNPTITCQMGSDLRSQSLFKRSLTFFRSLNFMRMRERAQTTRPTTSTQVHHMISERRRREKLNENFQALRSLLPPGTKKDKASILTTAKETLSSLMAKIEKVKERNKQLEASSSSMAAPAKEASSSTDHEPSNLRLSVRVSHEPESRSAEARIVDLEVIVRGQSSQVDILIRLLGFLKQHQNLSLISMGANTHLAQGTSFNRVTLRLRIEGSEWDESAFQEAVRRVVADLAQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g0080 446 SMART finulus 266 315 IPR011598 GO:0046983
Bisa02g0080 446 MobiDBLite consensus disorder prediction 99 125 - -
Bisa02g0080 446 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 88 443 IPR044658 -
Bisa02g0080 446 MobiDBLite consensus disorder prediction 323 348 - -
Bisa02g0080 446 Gene3D - 259 332 IPR036638 GO:0046983
Bisa02g0080 446 Coils Coil 299 326 - -
Bisa02g0080 446 CDD bHLH_AtbHLH_like 265 315 IPR045239 -
Bisa02g0080 446 MobiDBLite consensus disorder prediction 317 356 - -
Bisa02g0080 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 327 IPR036638 GO:0046983
Bisa02g0080 446 Pfam Helix-loop-helix DNA-binding domain 263 309 IPR011598 GO:0046983
Bisa02g0080 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 260 309 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g0080 Bisa-ChrBisa02 613527 616981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa02g0080 4 55 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.509 2.71e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa02g0080 HLH 6.1e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g0080 02 613527 616981 Bisa02g0080 02 613527 616981 ECH