LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g4166	ATGGACTCGCTGAGGAAATCTTTCAAATCATATGGAAGTCCGTACAAGCATTCCCGAAAGATTTCCTCCGGCGGAAGCGGCGACTCCGGCCCCGAAGAGCTTCCCATTCTTCTCGAGCAAGATCTCCCTCACGAAGAGCAATTCCATTCAGCCGGCGACAGTGATCCTCCCATGACCTCCGCCGCCAGCACCTCCCCCCGCGGCGAGGTCATCGTCAAGATAGACGAAGGAGCCGCCGACTCCAGAGGCACCTCCATTTCACCCGCCGCAGCGGCAGCGCTCGGAGACCCCAAAATCGTCGGCAGCAAGATTTGGCGGGAATCCAGCTACGATTTCTGGAATGACGACGACGTCAAGAATATGACCCCGCTCGACGAGGGCTTCGATTTTAAGCATCGACCTGCAATGCAGAGCCAGAGCTCCGAGGATCCACCGTCCAAGCTCATCGGAAGATTCTTACACCATCAGAAACTCTCCGGCGACATGTCGCTGGACATGGATTTGGATATGGACGAACTCCAACAAGAATTTGGCCGGAATCTGACCCCCGTGGACGAGTCTCTCTCCATGAGCCACTTCTCCCGGGAGCTCAAGGTCTCCTTCGAAGACCCCCCGTCGTCCTCCGGCGACGACATAAACGACTCTGTCAAACGGCGGCAAATCAAGGACCCCTCCGGCATCGACGAATTTCAAAATCAAAAACCGCCAATCCCGCCGTATCGCTCCCCGGCTCACAGAGACTACGCCGGCAACCCCGACGGCGAGGTCGTGAGGTGCACGTCGAACGCGTCTTTCGAGAGAAACCTCTCGTTACAGAGGAAATCCGGCCTCCTCGTCAGGGCGAAAACAAAGTCCAGATTGATCGACCCGCCAGACGAACCCGACCGCAAATCCGAATGGGCCATGAGATCGGGTCAAGTATTCTCGGGCATGCAACAGAAAAAAGGAGACGAGGATGAGGAAGACCCGTTCTTGGAAGAGGACCTTCCAGATGAGTTCAAAAAAACCAAATTCTCCATATGGATCTTTCTCGAATGGCTGAGTCTGATTTCAATCGTAGCTCTGTTAATAACAACACTCTGTATCCCATCCTTACGAGACAAAGAACTCTGGAAGCTCAACTTATGGAAATGGGAAGTCATGGTTCTGGTTCTCATCTGTGGACGATTAGTCTCAGACTGGGTCATCCGAATAGTCGTCTTCTTCATCGAAAGGAACTTCCTTTTGCGTAAAAGAGTTCTCTATTTCGTGTATGGAGTCAGAAAAGCAGTTCAACGAAGCCTCTGGCTCGGCCTAGTCCTAATGACATGGCACTTTTTGTTTGATGAGAGAGTTCAGAAAGCCACAAAGAAAGAAGAAATGCTAGAATATGTCACAAAGATCCTGTTCTGTTTCTTGGTGGGGACACTGGTCTGGCTGGTGAAGACTCTCATGGTGAAGGTTCTGGCTTCTTCCTTCCACGTCAGCACATACTTCGACAGGATCCACGAATCTCTGTTCAATCAGTTCGTGATTGAAACCCTGTCGGGGCCTCCATTAGTGGAGCTCATAAGGCAGGAGGAAGAAGAAGAGAGGCTAGCCGATGAAGTTCAGAAGCTTCAGAATGCAGGGGTGACCATACCTCCTGATCTGAGAGCATCGGCTTTTGCTTCTATCAGGAGCTCGAGGGTGACGAAGAGTGGGTTGCTTCAGAAGAGTCCGATGCTGAGAAGTGGCAGGCTTTCGCGACCACTTTCGAAGAAGTCCGATGAAGGGAATGGGATATCCATTGACCACTTACATAAGTTGAATCACAAGAATGTGTCTGCTTGGAACATGAAGAGGTTGATGAATATTATACGAAATGGGGCTCTTACGACGTTGGATGAACAGATACTAGGTTCCGCTTATGAAGATGAGAAAATCACACAAATTAGAAGTGAAAATGAGGCTAAAGCTGCAGCAAAGAAAATATTCCAGAATGTTACTAGGCGTGGAGCCAGGTTCATATACCTGGAGGACTTGTTACGCTTTATGAGAGAAGATGAGGCTATCAAAGCCATAGCTCTCTTTGAAGGAGCCACTGAGACTGGGAAAATCAGCAAATCAGCCTTGAAGAATTGGGTGGTGAATGCATTCCGAGAGAGAAGAGCACTTGCTTTGACATTGAATGACACAAAAACCGCAGTGAACCAACTTCATCGAATGTTAAATTTTTTAGTGGCCATTGTAATTCTTGTTCTTTGGCTCTTAATTCTGGGAATCGCCACCACCAAGTTCTTGCTCTTCCTCAGCTCTCAGTTGGTGTTGGTGGCATTCATATTTGGAAACACCTGCAAGAACATATTTGAAGCCATCATTTTCTTGTTCGTTATGCACCCTTTTGATGTGGGAGATAGATGTGAAATTGATGGGGTTCAGATGGTTGTAGAAGAAATGAACATACTGACAACCATATTTCTGAGATATGACAATCTGAAGATTATGATCCCTAATAGTGTTCTTGCTAGTAAGGCCATAAATAATTTCTACCGAAGTCCTGACATGGGAGATGCTGTTGAGTTCTTTGTACATGTATCTACACCAGCTGAAAAGATCTCACTTATCAAACACAAAATATCGAGTTACATGGAATGCAAGAAGGAGCATTGGTATCCTTCACCTATGATAGTGTTTAAGGATCATGAGCATCTGAACATGATAAGAATGGCCATTTGGCCAACTCACAGAATGAACCACCAAGACATGGGAGAAAGATTTAACAGAAGATCCTCTTTGATTGAAGAGATGATCCGGATTTTCCGAGACACCGACATCCAGTTCCGACTACTTCCCCTTGATATTAGCATCAGAAGCACGCCCACCACTTCCGAACGGCTTCCTCCTAGTTGGGTTTCTGCCACGAGTTGA	2889	0.4787	MDSLRKSFKSYGSPYKHSRKISSGGSGDSGPEELPILLEQDLPHEEQFHSAGDSDPPMTSAASTSPRGEVIVKIDEGAADSRGTSISPAAAAALGDPKIVGSKIWRESSYDFWNDDDVKNMTPLDEGFDFKHRPAMQSQSSEDPPSKLIGRFLHHQKLSGDMSLDMDLDMDELQQEFGRNLTPVDESLSMSHFSRELKVSFEDPPSSSGDDINDSVKRRQIKDPSGIDEFQNQKPPIPPYRSPAHRDYAGNPDGEVVRCTSNASFERNLSLQRKSGLLVRAKTKSRLIDPPDEPDRKSEWAMRSGQVFSGMQQKKGDEDEEDPFLEEDLPDEFKKTKFSIWIFLEWLSLISIVALLITTLCIPSLRDKELWKLNLWKWEVMVLVLICGRLVSDWVIRIVVFFIERNFLLRKRVLYFVYGVRKAVQRSLWLGLVLMTWHFLFDERVQKATKKEEMLEYVTKILFCFLVGTLVWLVKTLMVKVLASSFHVSTYFDRIHESLFNQFVIETLSGPPLVELIRQEEEEERLADEVQKLQNAGVTIPPDLRASAFASIRSSRVTKSGLLQKSPMLRSGRLSRPLSKKSDEGNGISIDHLHKLNHKNVSAWNMKRLMNIIRNGALTTLDEQILGSAYEDEKITQIRSENEAKAAAKKIFQNVTRRGARFIYLEDLLRFMREDEAIKAIALFEGATETGKISKSALKNWVVNAFRERRALALTLNDTKTAVNQLHRMLNFLVAIVILVLWLLILGIATTKFLLFLSSQLVLVAFIFGNTCKNIFEAIIFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRYDNLKIMIPNSVLASKAINNFYRSPDMGDAVEFFVHVSTPAEKISLIKHKISSYMECKKEHWYPSPMIVFKDHEHLNMIRMAIWPTHRMNHQDMGERFNRRSSLIEEMIRIFRDTDIQFRLLPLDISIRSTPTTSERLPPSWVSATS	962

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g4166	962	PIRSF	Memb_At2g17000	63	961	IPR016688	-
	Bisa01g4166	962	MobiDBLite	consensus disorder prediction	198	255	-	-
	Bisa01g4166	962	FunFam	Predicted mechanosensitive ion channel	787	836	-	-
	Bisa01g4166	962	Gene3D	-	787	836	IPR023408	-
	Bisa01g4166	962	MobiDBLite	consensus disorder prediction	1	93	-	-
	Bisa01g4166	962	Coils	Coil	513	536	-	-
	Bisa01g4166	962	Pfam	Mechanosensitive ion channel	729	934	IPR006685	GO:0016020\|GO:0055085
	Bisa01g4166	962	SUPERFAMILY	Sm-like ribonucleoproteins	776	836	IPR010920	-
	Bisa01g4166	962	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	43	957	IPR016688	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g4166	Bisa-ChrBisa01	99726414	99733644	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g4166	61	962	Mechanosensitive Ion Channel Family	AT1G78610	55.626	0.0	927