Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g4122 ATGAGTTTCTTTAGTACGCTATACGGGGTTTGTGGATTTGGAATGGGGATTTCAGTTGGTCTTGTTATAGGATATTTTCTCTTCATTTACGTTCAACCCAGCGATGTAAAGCATCCTGTAATTTTTCCATTAGCAGATCTTGAGACAGAAGTTTTGCAACGAATGTTTCCTCAGATTCCAATTTGGATGAAAAATCCAGACTTTGACCGGCTTGACTGGCTAAACAAGTTTCTTCAGTATATGTGGCCTTACCTGGACAAGGCTATCGTCAAGACTACAAAGGATATTGTAACACCTATGATTGCTGAGCAGATTAAACCTTATAATTTTATCGAGTCAGTTGAGTTTGAACAGTTCACACTGGGGACCCTACCACCAACTTTTCAAGGGATGAAAGCCTTTATGACTGATGAGAAAGAGCTCATTATGGAGCCTTGTTTAAAGTTTGCTGGAAATCCTAATATCATTGTTGCTGTTAAGGCGTGTGGATTGAAAGCAACTGTTCAGGTGGTGGACGTACAAGTTTTTCTTATGCCTCGTATTACCTTGAAGCCTTTGGTGCCAGCATTTCCTTGCTTCTGCAATATATTCGTGTCTCTCATGGAGAAGCCATATGTTGACTTTGGGCTAAAGCTTCTAGGGATTGATCTTATGGCTATTCCTGGCCTCTATAGGTTCATTCAGGAGACAATAAGTAATCAGGTTGCAGATATGTATTTATGGCCAAAAGTCCTCGAAGTTCAAGTTTTAGATCCAGTAAAAGCCTTGAAGAGGCCTGTTGGAATTATCACTGCTAAGGTTGTCAAAGCAATGAAGCTAAGGAAGTTAGATTTTCTTGGTTCATCTGATCCTTACATAAAACTAAAGCTTTCTGAAGAGAAAATGATAGCAAAAAAGACTACAGTGAAGCACAAAAATTTAAATCCCGAGTGGAATGAGGAATTTAACATGCTTGTCAAAGATAAAGAGAATCAGGTTTTAAAGCTTACAGTCTTTGACTGGGATCAGGTTGGGAAGCATGAAAAAATGGGTGTAAATGTTGTCCCTTTAAAAGATGTTCCTCCTGATCACCCTAAAATTTTTACTCTTGATCTCTTGAAAAGCATGGATCTTGAGGATGCTAACCCCACGAAGTCACGCGGTCAGCTTGTCGTAGAATTGACATTTAAGCCATTCAAAGAGGAGGACATAGTCGGTGGTGAAGAACCAACAATACTACAAAAGGCTCCTCAAGGTACTCCCCCTGGTGGAGGTCTACTTGTGGTTATAGTCCATGAAGCTCAAGATGTTGAAGGAAAGTACCACACTAATCCACAGGCAAGGATTATTTTCAAAGGGGAGCAGAAAAGGACCAAGCACATAAAAAAGACTAGAGATCCAAGATGGGTAGAAGAGTTCCAATTTATGGCAGACGAACCTCCCACTAAGGAGAAATTACATGTCGAGGTTGTCAGCACCTCATCACGTAACCTGCGGTGTCGAAAGGAATATCTGGGTCATGCTGAGATTTCTCTTTCGGACGTCGTTGCTAACAAGAGAATCAATGAAAAGTACCATCTTATAGACTCAAAGAATGGTCGCATTCAGATAGAAATGCAGTGGATATCTTCATAA 1614 0.4033 MSFFSTLYGVCGFGMGISVGLVIGYFLFIYVQPSDVKHPVIFPLADLETEVLQRMFPQIPIWMKNPDFDRLDWLNKFLQYMWPYLDKAIVKTTKDIVTPMIAEQIKPYNFIESVEFEQFTLGTLPPTFQGMKAFMTDEKELIMEPCLKFAGNPNIIVAVKACGLKATVQVVDVQVFLMPRITLKPLVPAFPCFCNIFVSLMEKPYVDFGLKLLGIDLMAIPGLYRFIQETISNQVADMYLWPKVLEVQVLDPVKALKRPVGIITAKVVKAMKLRKLDFLGSSDPYIKLKLSEEKMIAKKTTVKHKNLNPEWNEEFNMLVKDKENQVLKLTVFDWDQVGKHEKMGVNVVPLKDVPPDHPKIFTLDLLKSMDLEDANPTKSRGQLVVELTFKPFKEEDIVGGEEPTILQKAPQGTPPGGGLLVVIVHEAQDVEGKYHTNPQARIIFKGEQKRTKHIKKTRDPRWVEEFQFMADEPPTKEKLHVEVVSTSSRNLRCRKEYLGHAEISLSDVVANKRINEKYHLIDSKNGRIQIEMQWISS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g4122 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 394 IPR035892 -
Bisa01g4122 537 FunFam Extended synaptotagmin-2 419 536 - -
Bisa01g4122 537 FunFam Synaptotagmin-2 isoform A 256 410 - -
Bisa01g4122 537 ProSiteProfiles C2 domain profile. 241 363 IPR000008 -
Bisa01g4122 537 PRINTS C2 domain signature 305 318 IPR000008 -
Bisa01g4122 537 PRINTS C2 domain signature 278 290 IPR000008 -
Bisa01g4122 537 PRINTS C2 domain signature 327 335 IPR000008 -
Bisa01g4122 537 SMART C2_3c 419 517 IPR000008 -
Bisa01g4122 537 SMART C2_3c 262 362 IPR000008 -
Bisa01g4122 537 ProSiteProfiles C2 domain profile. 399 518 IPR000008 -
Bisa01g4122 537 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 9 534 IPR045050 GO:0008289
Bisa01g4122 537 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 250 IPR031468 GO:0008289
Bisa01g4122 537 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Bisa01g4122 537 Gene3D C2 domain 419 535 IPR035892 -
Bisa01g4122 537 Gene3D C2 domain 257 404 IPR035892 -
Bisa01g4122 537 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 243 IPR039010 -
Bisa01g4122 537 Pfam C2 domain 419 520 IPR000008 -
Bisa01g4122 537 Pfam C2 domain 262 356 IPR000008 -
Bisa01g4122 537 CDD SMP_SYT 60 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g4122 Bisa-ChrBisa01 98949452 98959829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g4122 256 517 Lipid Metabolism Gene Families AT3G61300 28.417 5.19e-13 70.1