Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g4104 ATGGGTGAGAGGATGAGTGGGAAGGTGAAGTGGTTCAATGACCAGAAGGGGTTTGGGTTCATAACGCCGGACGATGGCGGCGAGGATCTCTTCGTTCATCAGTCGTCGATCCGATCCGAGGGGTTCCGGAGCCTCGGCGAAGGGGAGTCCGTGGAGTTTGTGATCGACTCGGATTCCGACGGCCGATCCAAGGCCGTCGATGTGACTGGACCGGAGGAGTCGTCTGTTCAAGGAAGCCGGCGCGGAGGTGGAGGAGGGGGTGGATTTGGTGGTGGAGGGAATAGGGGATACGGCGGTGGACGAGGAGGCGGTGGGTTCGGCGGCGGAAGAGGAGGCGGTGGGTACAGCAGCGGAGGCGGTGGATACGGCAGCGGAGGGGGAGGATACGGCGGTGGTGGCGGAGGGTACGGTGGGGGAGGCGGAGGGTACGGCGGGGGAGGCGGAGGTGGGGCTTGTTATAAGTGTGGTGAGACGGGACATATAGCTAGGGACTGCTATCAGGGAGGCGGAGGCGGCGGGGGAGGAAGGTATGGAGGCGGCGGATACGGCGGCGGAGGCGGCGGCTACGGTGTCGGAGGCGGCGGCGGAGGAGGGAGCTGCTACAACTGTGGGGAATCAGGGCACTTCGCGAGGGAATGCCCTAACAGCGCTCGCTAA 657 0.6484 MGERMSGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSEGFRSLGEGESVEFVIDSDSDGRSKAVDVTGPEESSVQGSRRGGGGGGGFGGGGNRGYGGGRGGGGFGGGRGGGGYSSGGGGYGSGGGGYGGGGGGYGGGGGGYGGGGGGGACYKCGETGHIARDCYQGGGGGGGGRYGGGGYGGGGGGYGVGGGGGGGSCYNCGESGHFARECPNSAR 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g4104 218 SUPERFAMILY Retrovirus zinc finger-like domains 142 169 IPR036875 GO:0003676|GO:0008270
Bisa01g4104 218 Gene3D - 195 218 - -
Bisa01g4104 218 Gene3D - 147 174 - -
Bisa01g4104 218 SMART c2hcfinal6 199 215 IPR001878 GO:0003676|GO:0008270
Bisa01g4104 218 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
Bisa01g4104 218 MobiDBLite consensus disorder prediction 53 94 - -
Bisa01g4104 218 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Bisa01g4104 218 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Bisa01g4104 218 FunFam Cold shock protein 1 1 69 - -
Bisa01g4104 218 SMART csp_8 6 71 IPR011129 GO:0003676
Bisa01g4104 218 FunFam Universal minicircle sequence binding protein (UMSBP), putative 193 218 - -
Bisa01g4104 218 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Bisa01g4104 218 Pfam 'Cold-shock' DNA-binding domain 5 70 IPR002059 GO:0003676
Bisa01g4104 218 Pfam Zinc knuckle 199 215 IPR001878 GO:0003676|GO:0008270
Bisa01g4104 218 Pfam Zinc knuckle 151 165 IPR001878 GO:0003676|GO:0008270
Bisa01g4104 218 ProSiteProfiles Zinc finger CCHC-type profile. 152 165 IPR001878 GO:0003676|GO:0008270
Bisa01g4104 218 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Bisa01g4104 218 PANTHER COLD SHOCK DOMAIN PROTEIN 2 117 216 - -
Bisa01g4104 218 ProSiteProfiles Zinc finger CCHC-type profile. 200 215 IPR001878 GO:0003676|GO:0008270
Bisa01g4104 218 Gene3D - 2 82 IPR012340 -
Bisa01g4104 218 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Bisa01g4104 218 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Bisa01g4104 218 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Bisa01g4104 218 SUPERFAMILY Retrovirus zinc finger-like domains 183 216 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g4104 Bisa-ChrBisa01 98606760 98607416 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bisa01g4104 CSD 4e-26 CL0021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g4104 01 98606760 98607416 Bisa01g4104 01 98606760 98607416 ECH