Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa01g4069 | ATGGAAGTTTGCCTCACTTCCAATTCCCATGCCCTCACCTTGACCTCGCGCTCTCCTTCTTCTTTCTCATTCTCCAATCTCCGATCCATCCGCACGCAGTTCCTTGGTTCTTCTCACAGTCTCCGGCCTCCCGGAGCTGGTGTGCGCTCTAGGAACCATAAATGCAAGAGGTTGCGACTTCTTCACCTTCATTCCCCTCGGTTTGTTTTCAAGGCCGGGTTGAGTTCTCACTCCGTCGTCGTCGTCGTGACCTTAGTTACTTTATCTGCGGTTTCTCTGTTCTACTACAATCTCACCAAGAGAAAGAAGAACTCCAAAGAGATACTGGGACGCCCCAAATTTGCATTTTCGCAACAGGGAAGTGATATTGGAAACCAGGGCATCGAAAGCCAGATTCTTTGCTTTCAGGAATTTCAAGGGGAGAACTTACTGAAAGAAATTGGGATATTGGAGGATAAATCTGGAGAAAAAAACCATGATTTTGAGGGCAAAGAGACCCAGCTATCATATTGGAGGTCTTCTTTGGTGAAAGAAGAGGCCATAATGACTAAGAAGTTAGAGTCACCTTCTGATGTTCTTACCTCTAGCGCTAACAATGCTTCATCTTCAACCAGTTCCAAGGTCGTAGATGAATCTTGTGTGTCCATGGACCTCCAATCAAGTTCATTTGAACCTATGTCTTTTGCCGCATCAATGACTGAATTACAAGTGGAAGAAAGTCAAGATAAAACTCACTCTGATTCCGAGTTGCCTATAATTATGGATAAATCTGAGCACACTGCTTCTTCTGATTGTGTAGACAATGCACTCACTATAGTAAAGGAACATGCGAACGAAAAAATTGAACTTGGCGCCATCAGCAGCGATGTCCTAACTGGTGAATCAGTTCAGAGGCAAGAACTTTACATGTTTTATGAGGTCAACAAGTCTGCAACGGGATCCATGATACCACTAAGCAGTTCAAAATCACCATCTTCTCGTTCTTCTTTCATGAAGAAAAATGAATTATACTCCACAATGGGGGATCCCGCCCTAAAAGGACCAGAATTATTAGAAGAGGTTTCTCTAGAAATTGCAGAGAATGTTGAAGTAGTGGAACCAAAAGCCAGTTACAAAGAAGGTTACCAAAAGCAAAATGGAAGTAGTTTCTTGAGGAAAGGGGGCAGATCTCTGAGAGACAGGGAAAATACCAATCTGGATCAGAAAAGCAACAACGTTTCCCCCCAGATTTCCCACTCAACCAGGGTGCATGTTGATCAGAAAAATAATCATTCTCAACATTTACGCACATATAATTCTTTGCTAAACAATGGAAGGTTACAAGAATCTGTAGAATTGCTTAAAGATATGGAAATGAAGGGATTTTTAGATATGACTAAGGTTTATCATGCAAAGTTTTTTAACATCTGCAAGAGAAAAAAGGCTGTTAGAGAAGCTTTTGATTACAGTAAGCTTATTCCAAATCCAAAATTGAGTACATTTAATATGCTTATGTCGGTTTGTTCAAGCTCTCAAGATACAGAAGGGGCTTTCCAAGTTCTGCAGCTTGTTCAGGAGTCTGGATTCAAACCCGATTGCAAACTTTATACCACTCTGATATCAACTTGTGCCAAGAGTGGTAAAGTTGATCAAATGTTTGAAGTATTTCATAATATGGTTAATTCTGGAGTAGAACCTAATGTTCATACCTATGGGGCACTAATTGATGGTTGCGCTAGGGCTGGGCAAGTTGCTAAAGCATTTGGAGCTTATGGGATAATGAGGTCTAAGAAAGTGAAGCCAGATCGCATTGTATTCAATGCACTTATAGCAGCATGTGCTCAGTCTGGAGCAGTGGATCGTGCTTTCGATGTTTTGGCAGAAATGGCAGCTGAATCGCAGCCCATTGAACCTGACCACATAACTATTGGTGCGTTGATGAAGGCATGCACAAATGCTGGTCAGGTAGAACGAGCACGAGAAGTATATAACTGGTTACATCAATATAATATAAAGGGAACTCCAGAGGTCTACACTATTGCCATCAATTCTTGCAGTCAAAGTGGAGATTGGGACTTTGCATGCAGTGTATACAGCGACATGACGGGAAAAGGGATTCTTCCTGATGAGATATTTCTGAGTGCATTAATAGATGTTGCTGGACATGCTGGAAAGCTGGATGCTGCATTTGAAGTCCTAAAAGAAGCACGTAATCGAGGAATACTAATTGGAAAAATGACATACAGCTCTTTAATGGGAGCCTGTAGCAACGCTGGAAATTGGCAGAAAGCATTGGAGCTATATGAGGATCTTAAGTCTCTTAAATTGGTGCGCACTGTTTCAACAGTGAATGCTTTGATCACTGCACTGTGTGATGGGGATCAATTTCAGAAAGCGATGGAGGTTTTATCTGAAATGAAAGGGTTAGGTCTGAGCCCAAACATTATCACATACTCAATAGTTATAGTGGCAAGTGAGAAAAAGGACGATCTGGAGGCAGGTCAAATGCTCCTTTCCCAAGCAAAAATGGACGGAGTTTCCCCTAATCCTGTCATGTCTAGATGCATAATCGGGATGTGCTTGCGGAGATATGAGAGGGCTTGCATTGTTGGTGAACCCGTTTTGTCTTTTGACTCTGGACGGCCAGATGTTAATAATAAATGGACATCACTGGCTTTAATGGTGTATCGTGAAATGATTGGAGATGGTGCAATGCCTAATGGTGAGGTTGTGTCAAAAATTCTTGGATGCCTGCGACTCCCTTATGATGCATCGTTGAAAGATAGACTTATTGAGACCCTGGGAGTAAATGCTGAAACTTCAAGAAGGTCAAACCTCTGTTCATTAGTAGATGGATTTGGTGAATATGATCCTCGTGCTTTTTCGATACTCGAGGAAGCTGCTTCTTTTGGAATTGTTTCATCTGTATCTTTTAAAGTGAATCCTATAGTTGTGGATTTAAAGGAGATGCACAATTATACTGCTGAGGTATACCTCTTAACTGTTTTGAAAGGTCTCAAGCATCGTCTTGCAGCAGGTAGGAGGTTACCCAACGTTATCATCTTATTGCCAATAGAGAAAACAAAAGTTCCATCTCCCAAGGGGGAAAAACTTATTAACCTTTCAGGAAGGGTTGGCCAGGCAGTTGCAGCACTATTGAGAAGGCTTAGAATATCTTACCAGGCTAGGGGATCAAATGGGAAAATCAGAATTAATGGAGTAACTTTGAGAAGATGGCTTCAGCCAAAACTTGCATCTCCTTTCGGTGGAAAATCAGGTGACCTGAGCTTATCCCAGTCACGACTGGGCAAAAGTATCAGTCATCAACAGAGAAACATTCGAAGTGGGAATCTGTCTTTGGATTAA | 3345 | 0.4182 | MEVCLTSNSHALTLTSRSPSSFSFSNLRSIRTQFLGSSHSLRPPGAGVRSRNHKCKRLRLLHLHSPRFVFKAGLSSHSVVVVVTLVTLSAVSLFYYNLTKRKKNSKEILGRPKFAFSQQGSDIGNQGIESQILCFQEFQGENLLKEIGILEDKSGEKNHDFEGKETQLSYWRSSLVKEEAIMTKKLESPSDVLTSSANNASSSTSSKVVDESCVSMDLQSSSFEPMSFAASMTELQVEESQDKTHSDSELPIIMDKSEHTASSDCVDNALTIVKEHANEKIELGAISSDVLTGESVQRQELYMFYEVNKSATGSMIPLSSSKSPSSRSSFMKKNELYSTMGDPALKGPELLEEVSLEIAENVEVVEPKASYKEGYQKQNGSSFLRKGGRSLRDRENTNLDQKSNNVSPQISHSTRVHVDQKNNHSQHLRTYNSLLNNGRLQESVELLKDMEMKGFLDMTKVYHAKFFNICKRKKAVREAFDYSKLIPNPKLSTFNMLMSVCSSSQDTEGAFQVLQLVQESGFKPDCKLYTTLISTCAKSGKVDQMFEVFHNMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKKVKPDRIVFNALIAACAQSGAVDRAFDVLAEMAAESQPIEPDHITIGALMKACTNAGQVERAREVYNWLHQYNIKGTPEVYTIAINSCSQSGDWDFACSVYSDMTGKGILPDEIFLSALIDVAGHAGKLDAAFEVLKEARNRGILIGKMTYSSLMGACSNAGNWQKALELYEDLKSLKLVRTVSTVNALITALCDGDQFQKAMEVLSEMKGLGLSPNIITYSIVIVASEKKDDLEAGQMLLSQAKMDGVSPNPVMSRCIIGMCLRRYERACIVGEPVLSFDSGRPDVNNKWTSLALMVYREMIGDGAMPNGEVVSKILGCLRLPYDASLKDRLIETLGVNAETSRRSNLCSLVDGFGEYDPRAFSILEEAASFGIVSSVSFKVNPIVVDLKEMHNYTAEVYLLTVLKGLKHRLAAGRRLPNVIILLPIEKTKVPSPKGEKLINLSGRVGQAVAALLRRLRISYQARGSNGKIRINGVTLRRWLQPKLASPFGGKSGDLSLSQSRLGKSISHQQRNIRSGNLSLD | 1114 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa01g4069 | 1114 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 737 | 771 | IPR002885 | - | |
| Bisa01g4069 | 1114 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 490 | 524 | IPR002885 | - | |
| Bisa01g4069 | 1114 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 525 | 559 | IPR002885 | - | |
| Bisa01g4069 | 1114 | MobiDBLite | consensus disorder prediction | 376 | 425 | - | - | |
| Bisa01g4069 | 1114 | Pfam | PPR repeat | 433 | 455 | IPR002885 | - | |
| Bisa01g4069 | 1114 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 | 625 | 716 | - | - | |
| Bisa01g4069 | 1114 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 667 | 701 | IPR002885 | - | |
| Bisa01g4069 | 1114 | MobiDBLite | consensus disorder prediction | 400 | 416 | - | - | |
| Bisa01g4069 | 1114 | Pfam | Pentacotripeptide-repeat region of PRORP | 640 | 781 | IPR033443 | - | |
| Bisa01g4069 | 1114 | Pfam | Pentacotripeptide-repeat region of PRORP | 492 | 625 | IPR033443 | - | |
| Bisa01g4069 | 1114 | Gene3D | Tetratricopeptide repeat domain | 420 | 626 | IPR011990 | GO:0005515 | |
| Bisa01g4069 | 1114 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 560 | 594 | IPR002885 | - | |
| Bisa01g4069 | 1114 | NCBIfam | pentatricopeptide repeat | 775 | 808 | IPR002885 | - | |
| Bisa01g4069 | 1114 | NCBIfam | pentatricopeptide repeat | 562 | 595 | IPR002885 | - | |
| Bisa01g4069 | 1114 | NCBIfam | pentatricopeptide repeat | 740 | 771 | IPR002885 | - | |
| Bisa01g4069 | 1114 | NCBIfam | pentatricopeptide repeat | 493 | 526 | IPR002885 | - | |
| Bisa01g4069 | 1114 | NCBIfam | pentatricopeptide repeat | 670 | 703 | IPR002885 | - | |
| Bisa01g4069 | 1114 | NCBIfam | pentatricopeptide repeat | 528 | 561 | IPR002885 | - | |
| Bisa01g4069 | 1114 | Gene3D | Tetratricopeptide repeat domain | 745 | 863 | IPR011990 | GO:0005515 | |
| Bisa01g4069 | 1114 | FunFam | Pentatricopeptide repeat-containing protein MRL1 chloroplastic | 717 | 864 | - | - | |
| Bisa01g4069 | 1114 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 595 | 629 | IPR002885 | - | |
| Bisa01g4069 | 1114 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 772 | 806 | IPR002885 | - | |
| Bisa01g4069 | 1114 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC | 11 | 1113 | - | - | |
| Bisa01g4069 | 1114 | Gene3D | Tetratricopeptide repeat domain | 627 | 743 | IPR011990 | GO:0005515 | |
| Bisa01g4069 | 1114 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic | 439 | 570 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa01g4069 | 431 | 908 | Glycosyltransferase | AT1G05670 | 23.188 | 5.82e-38 | 151 |