Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g4044 ATGATGAGTATTGGAGTACAGTCTTTTCTTCGTTTCTGTGATTTCCATCTTTCTTTCTTTCTGCCCGTAAAAACAGGGAAAAGGAAAAAAAAAATTTCTTGGGCTGTTCCTCAACCTGAAGTAATGGAGGTTGTTGCGGTGGCGAAAGCGTTGAAGCCCAGTTTGCAACGGGAATTGGCTTTCCAGCAGAAAGGGTTTTGTGAGGAGATGTTGTGCCTGAACGGAAACAACGGCGGCGCCGGCGAGGATTTCTCCGTCGACGACCTTCTCGACTTCTCCAACGGCGAATTCCAACATGGGTTTGTTGGGAACGGAGAGGTTTTTGAGGAAGACGACGAAGAGAAGGACGGGTCGTCTGTTTCCGACGACGTGAACTCTAACTCCGGCAGTGTTTCCGGCACCGGCGATTCTGAGTCCGCTTTCGCTGGCGAACTCGCCGTTCCGGATGATGATTTAGCAGACCTGGAGTGGGTTTCTCACTTCGTGGACGATTCTCTGCCGGAGATGTCTCTATGGTATCCGGTCCGCTCACAGCAAGCGAAGACGCTGCCGGAAAAGCGGTCTGAAGCGGAATCTGAACCGAAAACCCCGTGTTCACTCTTTAAACCACCGGCCAAAGTGAGAAGCTCCAAAGCCAGAAAAGCCAACGCTCGCGCCTGGTCCGGCAGCCCCCTGCTCTCGCCGCCGTTTCCGGCTCTCCCTTCTACCGGCGAACCGCCGGCGAAGAAGCTGAAGAAGAAGAACAAACAAACGGAGGGGGAAGCAGGTGGGTCCCAGGCTCAGCGTCGATGCAGTCATTGTCATGTGCAGAAGACGCCACAGTGGCGAACCGGTCCACTCGGTGCCAAAACGCTTTGTAACGCATGCGGAGTCCGGTTCAAGTCTGGCCGGCTTTTTCCAGAGTATAGACCGGCCTGTAGTCCGACCTTCTCGAGTGAAATTCACTCAAATAGCCATCGGAAAGTATTGGAGATGAGAAGGAGGAAGGAGACGGCCGGCACCGAGCCCGGTCCGGTTCAGACACAAATGGTTCAGGGTTATTAA 1044 0.5374 MMSIGVQSFLRFCDFHLSFFLPVKTGKRKKKISWAVPQPEVMEVVAVAKALKPSLQRELAFQQKGFCEEMLCLNGNNGGAGEDFSVDDLLDFSNGEFQHGFVGNGEVFEEDDEEKDGSSVSDDVNSNSGSVSGTGDSESAFAGELAVPDDDLADLEWVSHFVDDSLPEMSLWYPVRSQQAKTLPEKRSEAESEPKTPCSLFKPPAKVRSSKARKANARAWSGSPLLSPPFPALPSTGEPPAKKLKKKNKQTEGEAGGSQAQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNSHRKVLEMRRRKETAGTEPGPVQTQMVQGY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g4044 347 CDD ZnF_GATA 263 320 IPR000679 GO:0006355|GO:0043565
Bisa01g4044 347 MobiDBLite consensus disorder prediction 183 264 - -
Bisa01g4044 347 ProSitePatterns GATA-type zinc finger domain. 264 289 IPR000679 GO:0006355|GO:0043565
Bisa01g4044 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 260 321 - -
Bisa01g4044 347 MobiDBLite consensus disorder prediction 328 347 - -
Bisa01g4044 347 SMART GATA_3 258 312 IPR000679 GO:0006355|GO:0043565
Bisa01g4044 347 PANTHER GATA TRANSCRIPTION FACTOR 72 337 - -
Bisa01g4044 347 Pfam GATA zinc finger 264 297 IPR000679 GO:0006355|GO:0043565
Bisa01g4044 347 MobiDBLite consensus disorder prediction 108 138 - -
Bisa01g4044 347 ProSiteProfiles GATA-type zinc finger domain profile. 258 294 IPR000679 GO:0006355|GO:0043565
Bisa01g4044 347 MobiDBLite consensus disorder prediction 121 137 - -
Bisa01g4044 347 FunFam GATA transcription factor 255 339 - -
Bisa01g4044 347 Gene3D - 255 332 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g4044 Bisa-ChrBisa01 97308767 97311427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g4044 50 345 C2C2-Gata Transcription Factor Family AT5G66320 41.520 1.30e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa01g4044 GATA 4.6e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1757 11 39139049 39147435 Bisa01g4044 01 97308767 97311427 CCT
Bisa01g4044 01 97308767 97311427 Bisa11g1757 11 39139049 39147435 ECH
Bisa01g4044 01 97308767 97311427 Bisa01g4044 01 97308767 97311427 ECH