Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3945 ATGCCTCTTACGGAGCTGAAAGAGCGTCATTTGGCAGCGACGGAGACGGTGGACACTCTCAGGGAGAAGGTAAAGCAAAGACGCCAGTCTTTGCTTGATACAGATATTGCTGGGTACGCTGGGTCTCAGGGTAAAACTCCTGTAAAATTTGAACCAACGGATCTGGTTTGCTGTAGAACATTGCAGGGTCATACAGGAAAGGTGTATTCATTGGACTGGACGGCTGAAAAGAATCGAATTGTTAGCGCATCGCAAGATGGCCGATTAATAATTTGGAATGCTCTAACAAGACAGAAAACTCATGCCATAAAGCTGGCTTGTGCATGGGTCATAACATGTGCTTTCTCACCCACTGGTCAATCTGTTGCTTGTGGTGGTCTTGATAGTGTTTGCTCTATTTTCAATCTCAATTCCCCCACTGACAAAGATGGAAATCTTACTGTTTCGCAAATGCTTAGTGGGCATAAGGGCTATGTTTCGTCTTGTCAATATGTCCCAAATAAAGACACTCATCTAATTACCGGTTCGGGTGATCAGACATGTGTTTTATGGGATATTACTACAGGTCTCAAAACATCTGTTTTTGGAGGAGAATTTCAATCTGGACATACTTCAGATGTGCTTAGCATTTCAATTAATGGATCCAACTCAATGTTTGTGTCTGGTTCTTGCGATGCAACTGCCCGATTGTGGGATACTCGTATGGCAAGTCGAGCAGTGCAGACATTTCATGGGCATGAGGGCGACGTCAATTCTGTGAAATTTTTTCCAGATGGAAATAGGTTTGGAACTGGTTCAGATGATGGAACTTGCAGATTGTATGACATTAGGACTGGACACCAACTTCAAGTATATTCTCCACCACCTGGGGACAATGACATCCCAGCTGTGACCTGCATTGCATTCTCTGTGTCAGGAAGGCTTCTTTTTGCTGGATATACAAGCGGTGATTGCTATGTTTGGGACTCTTTATTGGCAAAGGTGGTTTTGAATTTAGGATCTCTCCAAAACTCTCATGAGGGTAGGATCAGCTGTTTAAGTTTGTCAGCTGATGGAAGTGCCTTATGTACAGGAAGCTTCGATACAAACTTAAAGATATGGGCATTTGGAGGGCATAGAACTGTGATTTGA 1131 0.4341 MPLTELKERHLAATETVDTLREKVKQRRQSLLDTDIAGYAGSQGKTPVKFEPTDLVCCRTLQGHTGKVYSLDWTAEKNRIVSASQDGRLIIWNALTRQKTHAIKLACAWVITCAFSPTGQSVACGGLDSVCSIFNLNSPTDKDGNLTVSQMLSGHKGYVSSCQYVPNKDTHLITGSGDQTCVLWDITTGLKTSVFGGEFQSGHTSDVLSISINGSNSMFVSGSCDATARLWDTRMASRAVQTFHGHEGDVNSVKFFPDGNRFGTGSDDGTCRLYDIRTGHQLQVYSPPPGDNDIPAVTCIAFSVSGRLLFAGYTSGDCYVWDSLLAKVVLNLGSLQNSHEGRISCLSLSADGSALCTGSFDTNLKIWAFGGHRTVI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3945 376 PIRSF GNBP_B 3 370 - -
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 376 - -
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 234 - -
Bisa01g3945 376 ProSitePatterns Trp-Asp (WD) repeats signature. 172 186 IPR019775 -
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 284 IPR001680 GO:0005515
Bisa01g3945 376 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Bisa01g3945 376 Pfam WD domain, G-beta repeat 338 367 IPR001680 GO:0005515
Bisa01g3945 376 Pfam WD domain, G-beta repeat 292 322 IPR001680 GO:0005515
Bisa01g3945 376 Pfam WD domain, G-beta repeat 201 232 IPR001680 GO:0005515
Bisa01g3945 376 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Bisa01g3945 376 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Bisa01g3945 376 SMART WD40_4 145 185 IPR001680 GO:0005515
Bisa01g3945 376 SMART WD40_4 192 232 IPR001680 GO:0005515
Bisa01g3945 376 SMART WD40_4 328 368 IPR001680 GO:0005515
Bisa01g3945 376 SMART WD40_4 54 93 IPR001680 GO:0005515
Bisa01g3945 376 SMART WD40_4 278 322 IPR001680 GO:0005515
Bisa01g3945 376 SMART WD40_4 236 275 IPR001680 GO:0005515
Bisa01g3945 376 SMART WD40_4 96 135 IPR001680 GO:0005515
Bisa01g3945 376 FunFam Guanine nucleotide-binding protein subunit beta 2 368 - -
Bisa01g3945 376 Gene3D - 10 368 IPR015943 GO:0005515
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 279 - -
Bisa01g3945 376 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 5 368 IPR016346 GO:0007165
Bisa01g3945 376 Coils Coil 3 23 - -
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Bisa01g3945 376 SUPERFAMILY WD40 repeat-like 52 367 IPR036322 GO:0005515
Bisa01g3945 376 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Bisa01g3945 376 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Bisa01g3945 376 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Bisa01g3945 376 PRINTS Beta G protein (transducin) signature 117 134 IPR001632 -
Bisa01g3945 376 PRINTS G protein beta WD-40 repeat signature 219 233 IPR020472 -
Bisa01g3945 376 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Bisa01g3945 376 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 152 189 - -
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats profile. 152 194 IPR001680 GO:0005515
Bisa01g3945 376 CDD WD40 57 368 - -
Bisa01g3945 376 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 367 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3945 Bisa-ChrBisa01 95036730 95041800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3945 122 369 U-box Gene Family AT1G04510 23.711 3.67e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa01g3945 01 95036730 95041800 Bisa01g3945 01 95036730 95041800 ECH