Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3915 ATGGAAGACGAAGACGAAGTCGTCTCGTGTTCTTCCGATTCTGACGATGACTACGCCAGCGAATGCGGAGAAGGCCCCGATGATGAGGATGACCAGTCGGAGGCCGAGTTTTTCTCTCCGCCCGATGACGAGCGGAAGTCGAAGAATGTCGATGCTCTTGTCAGGGGCAACCTGGTCGTCAAGACACAGTCATTGCTTCCACGAGTTCTTTCAGTGTCAGAAGGAGCAGCTGTTTGCAGAAAACCCTTTAAACCTCCCTGCTCCAACGGTTACAATGGTAGAAATGAAGAGCTTACGCGTCGCCTTTGTGCTCGGAAAAGGTTTGTCCCATGGGGCTCTACCAGACCGGTATTAGTTGCAATTACCAACCGGTTGAATGCACCAACAAACGTTGAAAAATATGTTCCCGAGGAGGAAGTCTCTTTGCCACATGGGATTGATCCTCTAGCGTTGTGGCAGCCTGAAGACTATGAGGATAGAGATTGTAATTTGAAGCCAATAACAGTGGACCCATTGCTTGTTCGTTTTCTTAGACCGCACCAGAGAGAAGGGGTTCAGTTTATGTTTGAATGTGTTTCAGGGCTATGTAGCACTGCAAATATTCATGGGTGCATCCTGGCAGATGATATGGGTTTGGGGAAGACATTGCAGTCAATCGCATTACTCTATACACTTCTTTGTCAAGGGTTTGATGGAAAGCCAATGGTCAGAAAGGCCATCATTGTGACCCCTACAAGCCTTGTTAGCAATTGGGAAGCTGAAATTAATAAGTGGATTGGAGAAAGGGTTCAGCTTGTTGCTCTATGTGAAAGCACAAGAGATGATGTCATCTCTGGGATTGACAATTTTACAAGTCCACACAGCTCTTTGCAGGTGCTGATTGTTTCTTATGAGACATTCAGGATGCATTCTTCAAAATTTAGCCATAGTGACTCTTGTGACCTACTCATATGTGATGAGGCTCACAGGCTGAAAAATGATCAGACAATAACAAACCGGGCATTGGCTGCTCTCCCATGCAAACGCAGAATATTGTTGTCAGGAACTCCTTTGCAGAATGACCTAGAAGAATTCTTTGCTATGGTTAACTTCACTAATCCTGGAATATTGGGTGACATTACACATTTTCGCCGTTACTTTGAGGCACCAATTATTTGTGGAAGAGAACCTACTGCCACTGCAGAAGAGAAGAAGCTAGGCGCTGAACGCTCTGCAGAGCTAAGTGCAAAAGTTAACCAGTTCATATTAAGAAGGACTAATGCATTATTATCAAATCACTTACCACCAAAGATAGTTGAAGTTGTTTGCTGCAAATTGACTCCACTACAGTCAGACCTATATAGACATTTTATACAATCCAAAAATGTTAAACGGGCAATTGTTGAAGAAGTGAAGCAATCAAAGATTTTAGCCTACATAACAGCGCTCAAAAAGTTGTGCAACCATCCAAAGCTTATATTTGATACCATACGAAGTGGGAGTCCAGGAACTTCAGGTTTCGAGGACTGCATTCGGTTCTTCCCACCAGAGATGTTATCAGGAAGATCGGGCTCATGGACTGGAGGGTATGGAGCTTGGGTTGAGTTGTCAGGAAAAATGCACGTCTTAGCAAGATTACTTGCCCAGTTACGGCAGAGAACCAACGACCGCATTGTCCTTGTTTCAAACTACACACAGACCCTGGATCTGTTTGCTCAATTGTGTCGGGAACGAAGGTATCCGTTCTTGAGACTTGATGGTACTACTTCAATCAGTAAAAGGCAGAAGTTAGTCAACCGCTTCAATGACCAATCTAAGGACGAATTCGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGCCTCAATCTAATTGGAGGAAATCGATTGGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTCTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCGGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGTCAAAAGAAGGGCTACAAAAAGTCATTCAGCAGGAGCAAACGGATAACCTTGTGGCACAGGGTAATTTTCTTTCGACAGAGGACCTCCGCGATCTGTTCACATTTCACGAGAATGTCAAGTCAGAGATTCATGAAAAGATGCAGTGCACCCGGTGCCAAACATGTGATGATGGGCTTGAGAGTACTGATGATGGGAAATATGCAGCTCAATCAACAATAAGTAACGGTGATTCTGATGAAGAAACCTCTGATGATATAGGTGGATTTGCAAAACTTGCAGGCTGCTTACAGGAGTTAAAGAGATCAGAAAAGCAGGTAGGAACCCCTTTGGAAGAAGATTTGGGTAGCTGGGGCCACCATTTTTTTCCAACGTCTGTACCAGATGCTATTCTTCAGGCTTCAGCCGGAGATGAGGTGAGCTTTGTTTTCACAAACCAAGTAAATGGAAAGCTGGCACCAATTGAAACAACTGTCAGTCCAAGGCTACAGCAAGAGGAATCAAGTAAGGAACTACTCAAGCCAAATCAGAACGTCAAAGCAAGTTCCATTACTACCTTACATAGCAAACCATCCTGTCAGTCTGTTTCTACTGTTGCCATTAAATCATCTTACTCTCCCAAGCCTTCAGTAAGAGCAGCTATGAACTCTGTTGGATATAACCAAAAAATTTCAACTCATGCAGCTTTAAAGACCCAAAACTCTCTTGTAAATCAATTACCCCAAAAAAGATCACGTCCTGTTTATGTCGATGATGATGATGATTTGGAATAA 2784 0.4357 MEDEDEVVSCSSDSDDDYASECGEGPDDEDDQSEAEFFSPPDDERKSKNVDALVRGNLVVKTQSLLPRVLSVSEGAAVCRKPFKPPCSNGYNGRNEELTRRLCARKRFVPWGSTRPVLVAITNRLNAPTNVEKYVPEEEVSLPHGIDPLALWQPEDYEDRDCNLKPITVDPLLVRFLRPHQREGVQFMFECVSGLCSTANIHGCILADDMGLGKTLQSIALLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEINKWIGERVQLVALCESTRDDVISGIDNFTSPHSSLQVLIVSYETFRMHSSKFSHSDSCDLLICDEAHRLKNDQTITNRALAALPCKRRILLSGTPLQNDLEEFFAMVNFTNPGILGDITHFRRYFEAPIICGREPTATAEEKKLGAERSAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYRHFIQSKNVKRAIVEEVKQSKILAYITALKKLCNHPKLIFDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGYGAWVELSGKMHVLARLLAQLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGTTSISKRQKLVNRFNDQSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDNLVAQGNFLSTEDLRDLFTFHENVKSEIHEKMQCTRCQTCDDGLESTDDGKYAAQSTISNGDSDEETSDDIGGFAKLAGCLQELKRSEKQVGTPLEEDLGSWGHHFFPTSVPDAILQASAGDEVSFVFTNQVNGKLAPIETTVSPRLQQEESSKELLKPNQNVKASSITTLHSKPSCQSVSTVAIKSSYSPKPSVRAAMNSVGYNQKISTHAALKTQNSLVNQLPQKRSRPVYVDDDDDLE 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3915 927 MobiDBLite consensus disorder prediction 1 37 - -
Bisa01g3915 927 SMART ultradead3 173 376 IPR014001 -
Bisa01g3915 927 FunFam Predicted protein 440 514 - -
Bisa01g3915 927 Pfam SNF2-related domain 180 486 IPR000330 GO:0005524|GO:0140658
Bisa01g3915 927 Gene3D - 440 709 - -
Bisa01g3915 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 418 IPR027417 -
Bisa01g3915 927 SMART helicmild6 562 646 IPR001650 -
Bisa01g3915 927 FunFam DNA repair and recombination protein RAD54-like 523 695 - -
Bisa01g3915 927 Pfam Helicase conserved C-terminal domain 537 645 IPR001650 -
Bisa01g3915 927 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 696 IPR001650 -
Bisa01g3915 927 MobiDBLite consensus disorder prediction 905 927 - -
Bisa01g3915 927 Gene3D - 418 726 IPR027417 -
Bisa01g3915 927 MobiDBLite consensus disorder prediction 1 48 - -
Bisa01g3915 927 Gene3D - 152 417 IPR038718 -
Bisa01g3915 927 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 368 IPR014001 -
Bisa01g3915 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 812 IPR027417 -
Bisa01g3915 927 CDD SF2_C_SNF 529 657 - -
Bisa01g3915 927 FunFam DNA repair and recombination protein RAD54 148 417 - -
Bisa01g3915 927 CDD DEXHc_RAD54 177 418 - -
Bisa01g3915 927 PANTHER SNF2/RAD54 FAMILY MEMBER 63 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3915 Bisa-ChrBisa01 94417568 94425218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3915 526 704 RAD5 or RAD16-like Gene Family AT5G43530 36.111 5.29e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa01g3915 SNF2_N 8e-54 CL0023