Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3902 ATGGCTCAGCCAACTTCGGACGGCGCCGATCTGAATCAGCAACAACGGCAAGAGCAACCGCAACCGCAACAGCAGCAGCAGCAGCAATGGGCGCAGCAGCAGCAGTATCACCAGCAATGGATGACTATGCAGTATCCGGCTTCGGCTATGGCGATGATGCAGCAGCAGATGATGATGTATCCGCAGCACTACATGCCTTACATGCACCATTATCAGCCGCCTCACCACCATTTGCAGCCGAAGCAGCCGCCGCCGCTCCCGCCTCAGCAGCAGTACCACCACCAGCAGGGCTCCGCCGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCACTGGATGGACGAGAGCTACCTATATAATTGCTTTGCTTACGCAGGCGAGGTAATTTCAGCCAAGGTTATACGAAATAAGCACACCGGTCAGTCGCAGGGATATGGATTTGTTGAGTTTTATTCACGTGCAACAGCTGAGAAAGTTTTGCAGAGCTATAATGCTACTATTATGCCACATACAGATCAGCCATTCCGTCTAAATTGGGCTACATTCAGTACGGGCGATAGGCAGCCTGATGCTAGTTCAGATCACTCTATATTTGTGGGGGACTTGGCTTTAGATGTTACTGATGCTATGCTAGAGGAAACGTTTGCAAGAAGATATTCATCTGTTAAAGGAGCAAAAGTAGTTATTGATTCTAACACTGGCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAAAATGAGAGATCCAGGGCAATGACTGAAATGAATGGTGTTCATTGTTCAAGTAGGCCAATGCGAATAAGTGTTGCAACACCCAAGAAATCATATGGACATCAACAACAATACTCTTCACAAGCTGTGGTGTTGGCTAATGGACATTCTTCTAATGGTGCTATGGCCCAAGGTTCCCAGTCTGAAGGGGACTCTAGTAACACAACTATATTTGTTGGAGGGCTTGATTCTGATGTCAGTGATGAAGATCTCAGACAACCATTTTTGGAATATGGTGAGGTTGTCTCTGTGAAGATACCAGTGGGAAAAGGGTGTGGATTTGTTCAATTTTCTAACAGAAAGCATGCTGAGGAAGCAATTCAGGCATTGAATGGGTTAGTGATCGGGAAGCAGCCAGTACGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAAAACGGATTCCAATGGAGGGCAGGGTTATGGAAGGCAGCATCAGGATATGAATATGCATGCTGCTGCTTAA 1251 0.4708 MAQPTSDGADLNQQQRQEQPQPQQQQQQQWAQQQQYHQQWMTMQYPASAMAMMQQQMMMYPQHYMPYMHHYQPPHHHLQPKQPPPLPPQQQYHHQQGSADEIRTIWLGDLHHWMDESYLYNCFAYAGEVISAKVIRNKHTGQSQGYGFVEFYSRATAEKVLQSYNATIMPHTDQPFRLNWATFSTGDRQPDASSDHSIFVGDLALDVTDAMLEETFARRYSSVKGAKVVIDSNTGRSKGYGFVRFADENERSRAMTEMNGVHCSSRPMRISVATPKKSYGHQQQYSSQAVVLANGHSSNGAMAQGSQSEGDSSNTTIFVGGLDSDVSDEDLRQPFLEYGEVVSVKIPVGKGCGFVQFSNRKHAEEAIQALNGLVIGKQPVRLSWGRSPGNKHWKTDSNGGQGYGRQHQDMNMHAAA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3902 416 SUPERFAMILY RNA-binding domain, RBD 306 408 IPR035979 GO:0003676
Bisa01g3902 416 CDD RRM1_SECp43_like 104 184 - -
Bisa01g3902 416 CDD RRM2_SECp43_like 195 274 - -
Bisa01g3902 416 MobiDBLite consensus disorder prediction 390 405 - -
Bisa01g3902 416 SUPERFAMILY RNA-binding domain, RBD 178 294 IPR035979 GO:0003676
Bisa01g3902 416 FunFam Polyadenylate-binding protein RBP47B 102 182 - -
Bisa01g3902 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Bisa01g3902 416 MobiDBLite consensus disorder prediction 71 98 - -
Bisa01g3902 416 SUPERFAMILY RNA-binding domain, RBD 69 186 IPR035979 GO:0003676
Bisa01g3902 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 94 391 - -
Bisa01g3902 416 Gene3D - 102 182 IPR012677 -
Bisa01g3902 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 387 IPR000504 GO:0003723
Bisa01g3902 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 275 IPR000504 GO:0003723
Bisa01g3902 416 Gene3D - 293 414 IPR012677 -
Bisa01g3902 416 MobiDBLite consensus disorder prediction 385 416 - -
Bisa01g3902 416 FunFam Polyadenylate-binding protein RBP47 297 414 - -
Bisa01g3902 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 264 IPR000504 GO:0003723
Bisa01g3902 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 380 IPR000504 GO:0003723
Bisa01g3902 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 169 IPR000504 GO:0003723
Bisa01g3902 416 Gene3D - 183 288 IPR012677 -
Bisa01g3902 416 SMART rrm1_1 104 179 IPR000504 GO:0003723
Bisa01g3902 416 SMART rrm1_1 197 271 IPR000504 GO:0003723
Bisa01g3902 416 SMART rrm1_1 316 383 IPR000504 GO:0003723
Bisa01g3902 416 MobiDBLite consensus disorder prediction 1 30 - -
Bisa01g3902 416 FunFam Polyadenylate-binding protein RBP47B 184 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3902 Bisa-ChrBisa01 94196272 94200430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3902 102 384 Eukaryotic Initiation Factors Gene Family AT2G23350 27.682 5.69e-29 117