Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3887 ATGACAGCTTTTGGCTTACTCGTGATTCTGAATGTAGTACTCTTATTGGTTCCCTTCTTATATTCCTCTTGTTGTGTTTCTGGTCATTCTTTGAATGACATTAAAATGTGGTGCAGCCAAACCCCTAATCCTCAACCGTGTGAGTATTTCTTGAGCAATAACCCCACGTCTGTGCTCAAACCCATCAAACACAAAGCTGATTTCCTCAAGCTCTCTCTCCAACTCGCCCAAGAGCGAGCATTGGTTGGCCACTCCAACACTCTCTCGCTGGGCCCAAAGTGTCGCAATCCACGCGAAAAGGCTGCATGGGCTGATTGCCTTGAGCTTTATGAGCACACCATTCACAAACTCAACAAAACTTTAGACCAAAACACCAAGTGCTCCCAAACCGATGCACAAACATGGCTCAGCACAGCTCTCACCAACCTTGAGACATGCCATGCTGGGTTTTACGAGCTTGGAGTTCAAGACTATGTGCTGCCCTTGATGTCCAACAATGTTACTAAGTTGTTAAGCAACGCCTTGGCTCTAAACAAGGTTCAATACGGAGAACCGAGTTATAAAGATGGCTTCCCAACGTGGGTTAAGCCTGGAGACAGGAAGCTGTTGCAGTCGTCTTCTCCAGCTTCTCGGGCAAACGCTGTGGTAGCTAAAGATGGGTCTGGCAAATACACAACGCTCAGTGCTGCCATAAACGCTGCGCCAAAGAGTAGTAGCGGGAGATATGTGGTATATGTGAAGGCGGGAATTTACAATGAACAAGTTGAGATAAAGGCGAAGAATATCATGTTGGTGGGAGATGGTATAGGGAGACTATAA 819 0.4652 MTAFGLLVILNVVLLLVPFLYSSCCVSGHSLNDIKMWCSQTPNPQPCEYFLSNNPTSVLKPIKHKADFLKLSLQLAQERALVGHSNTLSLGPKCRNPREKAAWADCLELYEHTIHKLNKTLDQNTKCSQTDAQTWLSTALTNLETCHAGFYELGVQDYVLPLMSNNVTKLLSNALALNKVQYGEPSYKDGFPTWVKPGDRKLLQSSSPASRANAVVAKDGSGKYTTLSAAINAAPKSSSGRYVVYVKAGIYNEQVEIKAKNIMLVGDGIGRL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3887 272 ProSitePatterns Pectinesterase signature 1. 238 257 IPR018040 -
Bisa01g3887 272 PANTHER PECTINESTERASE 15 270 - -
Bisa01g3887 272 Gene3D - 208 271 IPR012334 -
Bisa01g3887 272 FunFam Pectinesterase 29 180 - -
Bisa01g3887 272 SMART PMEI_2 29 177 IPR006501 GO:0004857
Bisa01g3887 272 Pfam Plant invertase/pectin methylesterase inhibitor 33 177 IPR006501 GO:0004857
Bisa01g3887 272 CDD PMEI-like_3 37 179 - -
Bisa01g3887 272 Pfam Pectinesterase 213 270 IPR000070 GO:0030599|GO:0042545
Bisa01g3887 272 NCBIfam pectinesterase inhibitor domain 7 179 IPR006501 GO:0004857
Bisa01g3887 272 SUPERFAMILY Pectin lyase-like 207 270 IPR011050 -
Bisa01g3887 272 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 180 IPR035513 -
Bisa01g3887 272 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 180 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3887 Bisa-ChrBisa01 93862638 93863456 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3887 1 271 Carbohydrate Esterase AT2G45220 58.088 5.62e-111 328