Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3886 ATGGCAGCTTTTGGCTTACTCGTGAATGTAGTACTCTTATTGGTTCCCTTCTTACATTCCTCTTGTGTTTCTGGTTATTCTTTGAATGACATTAAAATGTGGTGCAGCCAAACCCCTAATCCTCAGCCATGTGAGTATTTCTTGAGCAATAACCCCACTAATATGCTCAAACCCATCAAACACAAAGCTGATTTCCTCAAGCTTTCTCTCCAACTCGCCCAAGAGCGAGCATTGGTTGGCCACTCCAACACTCTCTCGCTGGGCCCAAAGTGTCGCAACCCACGTGAAAAGGCTGCATGGGCTGATTGCCTTGAGCTTTACGAGCACACCATTCACAAACTCAACAAAACTTTAGACCAAAACACCAAGTGCTCCCAAACCGATGAACAAACATGGCTCAGCACAGCTCTCACCAACCTCGAGACATGCCATGCTGGGTTTTACGACCTTGGAGTTCAAGACTATGTGCTGCCCTTGATGTCCAACAACGTTACTAAGTTGTTAAGCAACGCCTTGGCTCTAAACAAGGTTCAATACGGAGAACCGAGTTATAAAGATGGCTTCCCAACGTGGGTTAAGCCTGGAGACAGGAAGCTGTTGCAGTCGTCTTCTCCAGCTTCTCGGGCAAATGCTGTGGTGGCTAAAGATGGGTCTGGCAAATACACAACCCTTAGTGCTGCCATAAACGCTGCGCCAAAGAGTAGCAGCGGGAGATATGTGATACATGTGAAGGCAGGAATTTACAATGAACAAGTTGAGATAAAGGCGAAGAATATCATGTTGGTGGGAGATGGTATAGGGAAGACTATAATCACGGGAAGCCAAAGTGTTGGAGGAGGGACTACAACCTTCCGTTCTGCCACAGTCGCTGTGGTAGGGGACCGCTTCATTGCTCAAGACATCACATTTAGAAACACTGCAGGAGCATCAAACCACCAAGCTGTAGCACTGCGTTCTGGGTCAGATTTATCGGTCTTCTACAGATGTAGCTTTGAAGGTTACCAAGATACATTGTATGTGCACTCTGAGAGGCAATTCTACAGAGAATGTGACGTCTATGGCACTGTTGACTTCATCTTTGGCAACGCTGCAGTTGTTTTCCAAAACTGTAACCTTTTCGCCAGAAACCCTCCGAACAAAGTGAACACAATCACCGCTCAAGGTCGAACTGATCCAAACCAAAACACTGGAATTTCCATTCACAATTCACGAGTTACGGCTGCCTCAGATCTGAAACCAGTTCAAAACTCCGTGAAGACCTATCTTGGAAGACCATGGCAGCAGTATTCTCGAACAGTGTTTATGAAGACTTTTCTTGATAGTATGATAAACCCGGCTGGCTGGTTGGAATGGAGCGGCAACTTTGCCCTAAACACTTTGTATTATGGAGAGTACATGAACACAGGTCCGGGTTCTTCTACAGCAAACCGAGTTAAGTGGTCTGGTTACCATGTCATCACCAGTGCTTCTGAAGCCTCCAAATTCACAGTTGGTAATTTCATCGCAGGCAACTCATGGTTGCCAGCTACTAGCGTCCCTTTCACTTCTGGTTTGTAA 1557 0.4624 MAAFGLLVNVVLLLVPFLHSSCVSGYSLNDIKMWCSQTPNPQPCEYFLSNNPTNMLKPIKHKADFLKLSLQLAQERALVGHSNTLSLGPKCRNPREKAAWADCLELYEHTIHKLNKTLDQNTKCSQTDEQTWLSTALTNLETCHAGFYDLGVQDYVLPLMSNNVTKLLSNALALNKVQYGEPSYKDGFPTWVKPGDRKLLQSSSPASRANAVVAKDGSGKYTTLSAAINAAPKSSSGRYVIHVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSQSVGGGTTTFRSATVAVVGDRFIAQDITFRNTAGASNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDVYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNSRVTAASDLKPVQNSVKTYLGRPWQQYSRTVFMKTFLDSMINPAGWLEWSGNFALNTLYYGEYMNTGPGSSTANRVKWSGYHVITSASEASKFTVGNFIAGNSWLPATSVPFTSGL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3886 518 CDD PMEI-like_3 34 176 - -
Bisa01g3886 518 Pfam Plant invertase/pectin methylesterase inhibitor 30 174 IPR006501 GO:0004857
Bisa01g3886 518 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Bisa01g3886 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 177 IPR035513 -
Bisa01g3886 518 SMART PMEI_2 26 174 IPR006501 GO:0004857
Bisa01g3886 518 PANTHER PECTINESTERASE 14 510 - -
Bisa01g3886 518 FunFam Pectinesterase 26 177 - -
Bisa01g3886 518 Gene3D - 205 518 IPR012334 -
Bisa01g3886 518 FunFam Pectinesterase 204 518 - -
Bisa01g3886 518 Pfam Pectinesterase 210 504 IPR000070 GO:0030599|GO:0042545
Bisa01g3886 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 177 IPR035513 -
Bisa01g3886 518 NCBIfam pectinesterase inhibitor domain 10 176 IPR006501 GO:0004857
Bisa01g3886 518 SUPERFAMILY Pectin lyase-like 204 517 IPR011050 -
Bisa01g3886 518 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Bisa01g3886 518 SMART complete 243 421 IPR006633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3886 Bisa-ChrBisa01 93838905 93840592 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3886 1 518 Carbohydrate Esterase AT2G45220 69.364 0.0 751