Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3848 ATGATTCCATTTCCACCTTCTTCTTCTTCTTCTGAGCCACCCCTTCAGTTTCACCACTGGGTCCCATCTCCATCTCCTTCTCCATCTCCATCTCCATCTCCGGCCACCGCTGCTCCAGCTATACTACCGGTTGCGATCGACAAATCAGCACCTACGCCGTCGAAGTTGCCGATTGACTTCAGCCCGCCTCTGATTGCAATGGTGGTGGTCGTCGCCACCGCCTTCCTCGTCGTCACTTATTCTCGCCTCATCTCGCGCCACATCATACCGCCGATTATCCGCTTCGCTCGCCGGTGGCGCCGCCGCCGGCGACGATCCTACCTCCCGTCCTCCTCCGGCGACCTCGATTCCCTCCCATACGACTCCCCCTTCGAGGCAATCGATGGTCCGCACGTGTTTTCCCCTTACGGCCTCGACGAGTCCGTCATCAAGACGATACCGTTTTCGCTCTACACCGCGAAATCCGACGGGCCATTCGAAGAGTCGCGACGCGATTGCGCTGTGTGCTTATTGGAATTCGAAGACGATGACTACGTTCGCACGTTACCCGTTTGTTTCCACACGTTTCACGTGGATTGCATCGATGTTTGGCTTAGGTCTCACGCGAATTGCCCTCTCTGCCGCGCCGGAGTTCTGTGCGCGGAGTCTCCGTTCACGCCGATGATGGCTGCTAGGATTCGGCCGAGCCTCGACGACGACACGATTTTGCATCGAATCAGTATGGAGCCTCTGGTGGAAGCTCCGTCGCCGGTGGCGCAATCTCTGGTCTCGGAGATCACTCCCTGCGTGGAAGACCAATCGCCGAGAAGGAACAATTCCAATTCAGAGGACCAATTCAACGGGGGTCGCGATTTCCTGCTGAAGCGATCCTACTCGTTCGGATTCGAACGGAGCCTGGCGTCGGAGAGAATGGTGATGGAGCCGGCGACGGCGTCTCCGTGGCGGTACCACCGGAGGGGGAGCAGCAGCAGCTTTTGGAGCAAAAGGCCGTCGCCGTTTGGATCGTTGGGGAAGCCTAGAGTGTTCTCGTTCAGATACTACAGAGGAATGAAATCACCTTTCTTCCGGCGACGAGGGTTCTTCCCATTGTCAGAGTCAAGCATGAGGTCGTACGGCGGGGGAAGCTCCTCCCGGCGAAGCAAGTCGATAGCGAGCCCGATGTTCCTGAGGTCATCAGCCTTAGCGGCGGCCGGAGTGGCTGCGTTCTCGTCGAGCCGGCTCCGGTGCGGCGATCCCGAGGCGCTGCTGTCGCCGGAGAGATATAACCGTAGATGA 1275 0.5851 MIPFPPSSSSSEPPLQFHHWVPSPSPSPSPSPSPATAAPAILPVAIDKSAPTPSKLPIDFSPPLIAMVVVVATAFLVVTYSRLISRHIIPPIIRFARRWRRRRRRSYLPSSSGDLDSLPYDSPFEAIDGPHVFSPYGLDESVIKTIPFSLYTAKSDGPFEESRRDCAVCLLEFEDDDYVRTLPVCFHTFHVDCIDVWLRSHANCPLCRAGVLCAESPFTPMMAARIRPSLDDDTILHRISMEPLVEAPSPVAQSLVSEITPCVEDQSPRRNNSNSEDQFNGGRDFLLKRSYSFGFERSLASERMVMEPATASPWRYHRRGSSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSMRSYGGGSSSRRSKSIASPMFLRSSALAAAGVAAFSSSRLRCGDPEALLSPERYNRR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3848 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 212 IPR013083 -
Bisa01g3848 424 MobiDBLite consensus disorder prediction 1 36 - -
Bisa01g3848 424 CDD RING-H2_EL5-like 165 208 - -
Bisa01g3848 424 SMART ring_2 166 207 IPR001841 -
Bisa01g3848 424 MobiDBLite consensus disorder prediction 19 36 - -
Bisa01g3848 424 SUPERFAMILY RING/U-box 159 213 - -
Bisa01g3848 424 PANTHER RING-H2 FINGER PROTEIN ATL16 49 239 IPR044600 GO:0016567|GO:0016740
Bisa01g3848 424 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Bisa01g3848 424 FunFam RING-H2 finger protein ATL65 131 212 - -
Bisa01g3848 424 Pfam Ring finger domain 165 208 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3848 Bisa-ChrBisa01 93011640 93012914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3848 57 424 C3H Transcription Factor Family AT3G18930 52.750 1.13e-98 299