Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3820 ATGTCAACCTTGGCACGCAAGCATCATCTCGTCAAGGGTCAAGATTTTCATTCTTACAGTTCTCTTACCATTGTTTTGGATCTTGCAATCTGGGTAACTCGTAATTCTAAGCCATTAGCGTCTTCAGACTCCTTAGAACAGAAGGTAAAAGATATAAGTATGACTGAATCAAGAGCTAACTTGATTCAACGTCCTGTAAAGGAGCAACCCTCTGACTCCCTGGATGGCCCAGTGGCTATTCTTTGGGATATTGAAAATTGTCCAGTTCCTCGTGATGTCCGTCCTGAAGATGTTGCTGGTAATATAAGAAAGGCTTTGCGGGTGCATCCAATAATTAAAGGAGCTGTCGTGATGTTTTCTGCTTATGGGGATTTCAATGCCGTCCCAAGGCGACACAGAGAGGGCTGCCAAAGGACTGGCGTTAAACTCATTTATGTTCCCAGTGGAGGAAAGGATGCTGCTGACAAAGCCATCTTGATCGACATGCTCTTGTACATCGTTGACAACCGTCCTCCTTGTTCTATAATGCTGATCTCTGGAGATGTAGATTTTGCTCCAGCGCTTCACATTCTCGGCCAACGGGGATATACTGTCATTCTTGTCATCCCTGATAGGGGGCGTGTTTCATCTGCCCTTTGCAATGCTGGTAAATTTGTCTGGGATTGGCCCAGAATTGCTCGTGGAGAAGTTTCCGGAGGATCTAAACCATTAGTGTCTTCAGACTCCTTAGAACAAAAGGGAAAAGATATAAGTATGACTGAATCAAGTGCTAACTTGATTCCTGTAAAGCAACAGCAACTTTCTGACTCCCTGGATGGCCCAGTGGCTATTTTTTGGGATATTAAAAGTTGTCCAGTCCCTCGTGAAGTCCGTCCTGAAGATGTTGCTGGTAATATAAGAAAGGCTTTGCGGGTGCATCCAATAATTAAAGGAGCTGTCAAGATGTTTTCTGCTTATGGGGATTTCAATGCCGTCCCAATGCGACACAGACAGGGCTGCCAAAGGACTGGCGTTAAACTCATTGATGTTCCCAAAGGAAGAAAGTATGCTGCTGACAAAGCCATCTTGATCGACATGCTCTTTTACATCGTTGACAACCGTCCACCTTGTTCTATCATGCTCATATCTGGAGATGAAGACTTTGCTCCAGCACTTCACATTCTCGGCCAACGGGGATATACTATCATTCTTGTCATCCCCGATAGGGTGGATGTTTCATCTGCCCTTTACAATGCCGGTGAATTTGTCTGGGATTGGCCCATAATTGCTCGTGGAGAAGTTTCTGGAGGATCTATATGTTCTTTCAGTGACCAAAGTGTCAAGGTTCAGCTGGTAAGGTTGCTTCAACTTTCTGAAGGGGTGTTCAAGCATGAGCTGCAAGAGATTGAGGCCATTTACCAGCAACGTTACAAGTGA 1416 0.4492 MSTLARKHHLVKGQDFHSYSSLTIVLDLAIWVTRNSKPLASSDSLEQKVKDISMTESRANLIQRPVKEQPSDSLDGPVAILWDIENCPVPRDVRPEDVAGNIRKALRVHPIIKGAVVMFSAYGDFNAVPRRHREGCQRTGVKLIYVPSGGKDAADKAILIDMLLYIVDNRPPCSIMLISGDVDFAPALHILGQRGYTVILVIPDRGRVSSALCNAGKFVWDWPRIARGEVSGGSKPLVSSDSLEQKGKDISMTESSANLIPVKQQQLSDSLDGPVAIFWDIKSCPVPREVRPEDVAGNIRKALRVHPIIKGAVKMFSAYGDFNAVPMRHRQGCQRTGVKLIDVPKGRKYAADKAILIDMLFYIVDNRPPCSIMLISGDEDFAPALHILGQRGYTIILVIPDRVDVSSALYNAGEFVWDWPIIARGEVSGGSICSFSDQSVKVQLVRLLQLSEGVFKHELQEIEAIYQQRYK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3820 471 Gene3D - 74 223 - -
Bisa01g3820 471 Gene3D - 274 419 - -
Bisa01g3820 471 Pfam NYN domain 77 217 IPR021139 GO:0004540
Bisa01g3820 471 Pfam NYN domain 274 412 IPR021139 GO:0004540
Bisa01g3820 471 PANTHER LIMKAIN B LKAP 68 244 IPR024768 GO:0005777|GO:0010468
Bisa01g3820 471 CDD PIN_limkain_b1_N_like 274 400 - -
Bisa01g3820 471 CDD PIN_limkain_b1_N_like 77 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3820 Bisa-ChrBisa01 92575374 92587345 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3820 268 425 C2H2 Transcription Factor Family AT5G61190 41.139 2.86e-29 120