Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3818 ATGGGTAATTCAAGTAATTCTAAACCATTAGTGTCTTCAGATTCCTTAGAACAGAAGGGAAAAGATACAAGTATGACTGAATCAAATGCTAACTTGCTTCAATGTCCTGTAAAGCAGCAACTTTCTAACTCCTTGGATGGCCCAGTGGCTATTCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTCCGTCCTGAAGATGTTGCTGGTAATATAAGAATGGCTTTGCGGGTGCATTCAATAATTAAAGGAGCTGTCGTGATGTTTTCTGCTTATGGGGATTTCAATGCCTTCCCAAGGCGACTTAGAGAGGGCTGCCAAAGGACTGGCGTTAAACTCGTTGATGTTCCCAATGGAAGAAAGGATGCTGCTGACAAAGCCATCTTGATTGACATGTTCTTGTTTGCCCTTGACAACAGTCCACCTTCTTCTATCATGCTGATATCTGGAGATGTAGATTTTGCTCCAGCACTTCACATTCTTGGCCAACGGGGATATACTGTCATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCATCTGCCCTTAGCAATGCTGGTAAATTTGTCTGGGATTGGCCCAGCATTGCTCGTGGAGAAGGCTTTGTGCCCCCCTCAAAGGCTCTGGTGCGACCTAGTGTGGCTCCAACTGAGGTTGCTGGATATCCGATGGGGTGCCATATCAATGACAACCTCAGTGGACAAAATGAAGAAGAGGCCATTGTTTATAGAGGGATCTCACAGAACTATAATAACAACTGGGGTCCCATATTTGTGTCACAATCTCGGGCTGAATACAACAGTGGTAGACTGAATGCGTCGAGCTTTCCAACAGCATTAAGGTCACATAGCCTTCCATCTAAATTGAATAATGTTTCTGGAGGACCTATATGTTCTTCCAGTGACCAAAGTGAATATCCATTAAGAGTACAGTCTGGGGATTTGAATGGTCTCAAGGTTCAGCTGGTAAGGTTGCTTGAACTTTCTGGAGGAGGCCTGCCTACGGCCCGTGTTGCAGGGGAGTATAAAAAATACTATGGGAGGACTCTTTGTGCATCTGATTATGGGGTGTGCAGACTAGTGAATCTTTACAAGAAGATGGGTGACACCTTAGCAGTGGAAGGGAAAGGGCCTCAGAAATTAGTTTGTTGCTTTGAGGCCATTTACCAGCAACGTTACAAGAAACCACTGGAATACCAGAGACTTGGTGTGGACAAGTTAGAGGATTTGTTTGAGAAAGTGAGCGATGTGGAAGTATTACAGGAAGAACCCGTAAGTAAGAGGAAGTTCCTGGCTGCTGTGGGTGGTTAG 1311 0.4485 MGNSSNSKPLVSSDSLEQKGKDTSMTESNANLLQCPVKQQLSNSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHSIIKGAVVMFSAYGDFNAFPRRLREGCQRTGVKLVDVPNGRKDAADKAILIDMFLFALDNSPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALSNAGKFVWDWPSIARGEGFVPPSKALVRPSVAPTEVAGYPMGCHINDNLSGQNEEEAIVYRGISQNYNNNWGPIFVSQSRAEYNSGRLNASSFPTALRSHSLPSKLNNVSGGPICSSSDQSEYPLRVQSGDLNGLKVQLVRLLELSGGGLPTARVAGEYKKYYGRTLCASDYGVCRLVNLYKKMGDTLAVEGKGPQKLVCCFEAIYQQRYKKPLEYQRLGVDKLEDLFEKVSDVEVLQEEPVSKRKFLAAVGG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3818 436 CDD PIN_limkain_b1_N_like 48 174 - -
Bisa01g3818 436 CDD LOTUS 315 384 - -
Bisa01g3818 436 PANTHER LIMKAIN B LKAP 25 397 IPR024768 GO:0005777|GO:0010468
Bisa01g3818 436 Pfam NYN domain 48 187 IPR021139 GO:0004540
Bisa01g3818 436 Gene3D - 381 427 IPR041966 -
Bisa01g3818 436 Gene3D - 311 380 IPR041966 -
Bisa01g3818 436 Gene3D - 43 194 - -
Bisa01g3818 436 MobiDBLite consensus disorder prediction 1 25 - -
Bisa01g3818 436 ProSiteProfiles OST-type HTH domain profile. 314 387 IPR025605 -
Bisa01g3818 436 Pfam OST-HTH/LOTUS domain 387 420 IPR025605 -
Bisa01g3818 436 Pfam OST-HTH/LOTUS domain 316 380 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3818 Bisa-ChrBisa01 92561136 92562712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3818 45 199 C2H2 Transcription Factor Family AT5G61190 40.000 9.81e-28 114