Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3817 ATGATCTTTGGGTTGATCACTATTTTACTTCTGTATCAGGATCTTCAACTTCATAGGCCATGTCGTAATTCACACTACCCTTCCCCTTGTTTGTTTTTCATTCACGCAATTTTGACAATCAATCTGTCCCTTCATCATTATCTGGGGATTATCAGTTTTGAAGAGGCTCGTTTGTTTGCTCTGCAAATGCTCGACTTAGCTTCGCGTGAACTCGGGGGGTTTGAGTTCTCTGCGCTTTCTTCGCAAGACTTGTCTTGTTTCCTTTTTGCTTGCTGGTGCAATGACCACCTCAATTACTGCACATTTGGCGTTGGCGTCCGTGCTTGTAACCTTGTGTCTTCAGACTCCTTAGAACAGAAGGGAAAAGATATGAGTATGACTGAATCAAATGCTAACTTGCTTCACTGTCCTGTAAAGCAGCAACTTTCTAACTCCTTGGATGGCCCAGTGGCTATTCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTCCGTCCTGAAGATGTTGCTGGTAATATAAGAATGGCTTTGCGGGTGCATCCAATAATTAAAGGAGCTGTTGTGATGTTTTCTGCTTATGGGGATTTCAATGCCTTCTTAAGAAAGGATGCTGCTGACAAAGCCATTTTGATTGACATGTTCTTGTTTGCCCTTGACAACAGTCCACCTTCTTCTATCATGCTGATATCTGGAGATGTAGATTTTGCTCCAGCACTTCACATTCTTGGCCAACGGGGATATACTGTCATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCATCTGCCCTTAGCAATGCTGGTAAATTTGTCTGGGATTGGCCCAGCATTACTCGTGGAGAAGGCTTTGTGCCCCCCTCAAAGGCTCTGGTGCGACCTAGTGTGGGTTCAACTGGGGATGCTGGATGTCTGATGGGGTGCCATATCAGTGACAACCTTGATGGACAAAATGAAGAAGAAGCCATTGTTTATAGAGGGATCTCACAGAACTATCATAACTCCTGGGGTCCCTCATTTGTGTCACAATCTCTGGCTGAATACAACAGCGGTACACTGAATGTGTCGAGCTTTCCAACAGCTTTAAGGTCCCATAGCCTTCCATGCCTTCCATCTAAATTGAATAATGTTTCTGGAGTTCCTATATGTTCTTCCAGTGACCAAAGTGAATATCCATTAAGGGTACAGTCTGGGGATTTGACTGGTCTCAAGATTCAGCTGGTAAGACTTGTGAATCTTTTCAAGAAGATGGGTGACACATTAGCAGTGGAAGGGAAAGGGCGTCAGAAATTAGTTTGTCTCCGAAACTGGAAAGCCGGCCCAAGTGCACCCCCTTTGTCTCAGGCAAAAAAAGATAAGAAAGGCAAGGGAGTTCAGGAAGAGAACATGGATATTGTTACTGCTGGCTGCTCTTCAGATGAGTTATCAGATGAAGAAAGAGTAGTGATAGAAGAACAAGATGAGAGAAGCAGCATGGGAAAGGGTTACCAGGGGAGAACAGCCGGATATGAAATTGATGGTCGTATTCTTGAGCAGTTCAAGCATGAGCTGCGAGAGATTCTAGTAAGCTTTTCTTGTCGTATATTCTTAGGTTGCTTTGGGGCCATTTACCAGCAACGTTACAAGAAACCACTGGAATACCAGAGACTTGGTGTGGACAAGTTAGAGGATTTGTTTGAGAAAGTGAGCGATGTGGTAGTATTACACGAAGAACCAGTAAGCAAGAGGAAGTTCCTGGCTGCTGTGGGTGGTTAG 1752 0.4435 MIFGLITILLLYQDLQLHRPCRNSHYPSPCLFFIHAILTINLSLHHYLGIISFEEARLFALQMLDLASRELGGFEFSALSSQDLSCFLFACWCNDHLNYCTFGVGVRACNLVSSDSLEQKGKDMSMTESNANLLHCPVKQQLSNSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPIIKGAVVMFSAYGDFNAFLRKDAADKAILIDMFLFALDNSPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALSNAGKFVWDWPSITRGEGFVPPSKALVRPSVGSTGDAGCLMGCHISDNLDGQNEEEAIVYRGISQNYHNSWGPSFVSQSLAEYNSGTLNVSSFPTALRSHSLPCLPSKLNNVSGVPICSSSDQSEYPLRVQSGDLTGLKIQLVRLVNLFKKMGDTLAVEGKGRQKLVCLRNWKAGPSAPPLSQAKKDKKGKGVQEENMDIVTAGCSSDELSDEERVVIEEQDERSSMGKGYQGRTAGYEIDGRILEQFKHELREILVSFSCRIFLGCFGAIYQQRYKKPLEYQRLGVDKLEDLFEKVSDVVVLHEEPVSKRKFLAAVGG 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3817 583 Gene3D - 149 275 - -
Bisa01g3817 583 Pfam OST-HTH/LOTUS domain 509 571 IPR025605 -
Bisa01g3817 583 Gene3D - 505 575 IPR041966 -
Bisa01g3817 583 CDD PIN_limkain_b1_N_like 149 255 - -
Bisa01g3817 583 CDD LOTUS 509 571 - -
Bisa01g3817 583 Pfam NYN domain 202 268 IPR021139 GO:0004540
Bisa01g3817 583 ProSiteProfiles OST-type HTH domain profile. 508 582 IPR025605 -
Bisa01g3817 583 PANTHER LIMKAIN B LKAP 126 540 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3817 Bisa-ChrBisa01 92531088 92533937 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3817 146 280 C2H2 Transcription Factor Family AT5G61190 34.839 3.95e-18 86.7