Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3813 ATGGCTAACTCAAGTACATCTACACCATTAGTGTCTTCAGACTCCTTAGAACAGAAGGGAACAGATATGAGTATGACTGAATCAAATGCTAACTTGGTTCAATGTCCTGTAAAGAAGCAGCTTTCTAGCTCCTTGGATGGCCCAGTGGCTATTCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTCCGTCCTGAAGATGTTGCTGGTAATATAAGAATGGCTTTGCAGGTGCATCCAATAATTAAAGGAGCTGTCGTGATGTTTTCTGCTTATGGGGATTTCAATGCCTTCCCAAGGCGACTCAGAGATGGCTGCCAAAGGACTGGCGTTAAACTCATTGATGTTCCCAATGGAAGAAAGGATGCTGCTGACAAAGCCATCTTGATTGACATGTTCTTGTTTGCCCTTGACAACAGTCCACCTTCTTCTATCATGCTTATATCTGGAGATGTAGATTTTGCTCCAGCACTTCACATTCTTGGCCAACGGGGATATACTGTCATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCATCTGCCTTTAGCAGTGCTGGTAAATTTGTCTGGGATTGGCCCAGCATTGCTCGTGGAGAAGGCTTTGTGCCCTTCTCAAAGGCTCTGGTGCGACCTAGTGTGGCTCCAACTGAGGTTGCTGGATATCTGATGGGGTGCCATATCAATGACAACCTTGATGGAAAAAATGAAGAAGAAGCCATTGTTTATAGAGGGATCTCACAGAACTATCATAACTCCTGGGTTCCCTCATTTGTGCCACAATCTCTGGCTGAATACAACAGTGGTACACTGAATGTGTCAAGCTTTCCAACAGCTTTAAGGTCACATAGCCTTCCATGCCTTCCATCTAAATTGAATAATGTTTCTGGAGGACCTATATGTTCTTCCAGTGACCAACGTGAATATCCATTAAGGGTACAGTCTGGGGATTTGAATGGTCTCAAGGTTCAGCTGGTAAGGTTGCTTGAACTTTCTGGAGGAGGCCTGCCTATGGCCCGAGTTGCAGTGGAGTATCAGAAATGTTATGGGAGGACTCTTTGTGTATCTGGTTATGGGGCGGGCAGACTGGTGAATCTTTTCAAGAAGATGGGTGACACATTAACAGTGGAAGGGAAAGGGCCTCAGAAATTAGTTTGTCTACGAAACTGGAAAGCCGGCCCAAGTGCACCCCCTTTGTCTCAGGCTAAAAAAGATAAGAAAGGCAAGGGAGTTCAGGAAGAGAACGTGGATATTATTACTGCTGGCTGCTCTTCAGATGAGTTATCAGATGAGGAAAGAGTAGTCATGGAAGAACACGATGAGAGAAGCAGCATGGGAAAGGGTCACCAGGGGAGAACAGCCGGATATGAAATTGATGGTCGTATTCTTGAGCAGTTCAAGCACGAGCTGCAAGAGATTCTAGTAAGCTATTCTTGTCGAATATTCTTAGGTTGCTTTGAGGCCATTTACCAGCAACGTTACAAGAAACCACTGGAATACCAGAGACTTGGTGTGGACAAGTTAGAAGATTTGTTTGAGAAAGTGAGCGATGTGGTTGTATTACACGAAGAACCAGTAAGCAGGAGGAAGTTCCTGACTGCTGTGGGTGGTTAG 1614 0.4504 MANSSTSTPLVSSDSLEQKGTDMSMTESNANLVQCPVKKQLSSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPIIKGAVVMFSAYGDFNAFPRRLRDGCQRTGVKLIDVPNGRKDAADKAILIDMFLFALDNSPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSAFSSAGKFVWDWPSIARGEGFVPFSKALVRPSVAPTEVAGYLMGCHINDNLDGKNEEEAIVYRGISQNYHNSWVPSFVPQSLAEYNSGTLNVSSFPTALRSHSLPCLPSKLNNVSGGPICSSSDQREYPLRVQSGDLNGLKVQLVRLLELSGGGLPMARVAVEYQKCYGRTLCVSGYGAGRLVNLFKKMGDTLTVEGKGPQKLVCLRNWKAGPSAPPLSQAKKDKKGKGVQEENVDIITAGCSSDELSDEERVVMEEHDERSSMGKGHQGRTAGYEIDGRILEQFKHELQEILVSYSCRIFLGCFEAIYQQRYKKPLEYQRLGVDKLEDLFEKVSDVVVLHEEPVSRRKFLTAVGG 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3813 537 CDD PIN_limkain_b1_N_like 48 174 - -
Bisa01g3813 537 Gene3D - 46 193 - -
Bisa01g3813 537 PANTHER LIMKAIN B LKAP 34 496 IPR024768 GO:0005777|GO:0010468
Bisa01g3813 537 Gene3D - 314 387 IPR041966 -
Bisa01g3813 537 Gene3D - 459 528 IPR041966 -
Bisa01g3813 537 CDD LOTUS 318 387 - -
Bisa01g3813 537 CDD LOTUS 463 525 - -
Bisa01g3813 537 Pfam OST-HTH/LOTUS domain 463 525 IPR025605 -
Bisa01g3813 537 Pfam OST-HTH/LOTUS domain 319 383 IPR025605 -
Bisa01g3813 537 ProSiteProfiles OST-type HTH domain profile. 462 536 IPR025605 -
Bisa01g3813 537 MobiDBLite consensus disorder prediction 1 25 - -
Bisa01g3813 537 Pfam NYN domain 48 185 IPR021139 GO:0004540
Bisa01g3813 537 ProSiteProfiles OST-type HTH domain profile. 317 390 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3813 Bisa-ChrBisa01 92468018 92469631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3813 45 199 C2H2 Transcription Factor Family AT5G61190 39.355 6.51e-27 114