Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3811 ATGTATGCAATGGTGTGTACTAGGCCTGATCTGGCTCATGCAGTCAGTGTGATTGAACTCGTGCACGCTCAATTCAAAAGAGCAAAAGGTAGAACGGAATTAGCTGATTTACAACTGGACTTGGATTTAGCCATAGCACAATTAGAAAAAGACCCTGACCCTGAAATACTCAAGAGGCTTTCTAAGAAGCTGCATCTTAGGACTATGAATGACCTCAAGAAAGAGTCAGCCGAAGTACATGAATTGGTTATATCAAGTCCTGGAAAACCAGGGGACTCTTTTGACATGGTGACATCTCTTCTTAAGAAGCTAAAGGACTATGTGTTCAATGAAAATCCTGAAGTTGATCCCCTCGAGGGTGAAACAGTTTCAATTAAGCACAGATCTCCCGTGATCCCTGGTGAATTTAGATGTCCAATATCTCTTGAAGTAATGAAAGATCCTGTAGTTGTCTCTACTGGAGAGACATATGAAAGATCCTGCATTCAAAAATGGCTCGATGCTGGGCATAAAACATGTCCCAAGACAGAGCAGACACTTCTGCACACAGCCCTAACCCTTAACTATACTTTGAAGAGTCTGATTGCATTATGGTGTGAAAGCAATGGCGTTGAGCTACCAAAGAAGCAAGGGAGCTGTAGAAAAAAAAAATCTGGAAGTAGACTTTCTGATTGTGACCGATTTACTATGAATGCTTTATTGGATAAACTGGCCAATGGCAATGTGGAACAGCAAAGGGCAGCAGCTGGTGAGCTTCGATTGCTGTCTAAGAGGAATACGGATAATAGAATATGTATTGCTGAGGCTGGAGCTATAACATTACTTGTAGATCTCCTGTCTTCATCAGATCCTCAAACCCAGGAGCATGCTGTTACAGCACTTCTCAATCTGTCCATCAATGAGAGTAACAAAGGAACCATAATCCGGGGCTGTACCAGATATTATGAGAACAAAGTTGCAATAGGAGCAGCTGGGGCTATCCCAGAAGGTAGTCCCAGAGGTAAAAAGGATGCTGCTACGGCTATCTTCAATCTTTCTATCCATCCAGGAAACAAAGCTAGAGCAGTAAAGGCCGGTATAGTGGACCCATTGATGACATTTCTTAGTGATGCTGGAGGTGGGATGGTAGATGAAGCGCTAGCTATTCTGGCAATTCTTGCAAGCCATCATGAAGGCGGGACGGCAATTAGTCAGGCTGAACCAATTCCTACTCTAGTTGAGGTTATCCGAACAGGCTCCCCACGCAACAGGGAGAATGCGGCCGCTGTGTTGTGGTCACTTAGCTCGGGAGATCTACTGCAGTTAAAACTGGCAAAGGACCATGGTGCAGAAGAAGCACTGCATGAATTATCAGAGAATGGCACTGATAGGGCCAAGAGAAAATCGGCAAGTATATTAGAACTCTGCAGCGAATGGAAGGGGATGATAATTTGCCAAACTCTTTATCTAGAGTAA 1455 0.4385 MYAMVCTRPDLAHAVSVIELVHAQFKRAKGRTELADLQLDLDLAIAQLEKDPDPEILKRLSKKLHLRTMNDLKKESAEVHELVISSPGKPGDSFDMVTSLLKKLKDYVFNENPEVDPLEGETVSIKHRSPVIPGEFRCPISLEVMKDPVVVSTGETYERSCIQKWLDAGHKTCPKTEQTLLHTALTLNYTLKSLIALWCESNGVELPKKQGSCRKKKSGSRLSDCDRFTMNALLDKLANGNVEQQRAAAGELRLLSKRNTDNRICIAEAGAITLLVDLLSSSDPQTQEHAVTALLNLSINESNKGTIIRGCTRYYENKVAIGAAGAIPEGSPRGKKDAATAIFNLSIHPGNKARAVKAGIVDPLMTFLSDAGGGMVDEALAILAILASHHEGGTAISQAEPIPTLVEVIRTGSPRNRENAAAVLWSLSSGDLLQLKLAKDHGAEEALHELSENGTDRAKRKSASILELCSEWKGMIICQTLYLE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3811 484 PANTHER U BOX DOMAIN-CONTAINING 13 309 - -
Bisa01g3811 484 Pfam U-box domain 132 202 IPR003613 GO:0004842|GO:0016567
Bisa01g3811 484 SMART arm_5 348 388 IPR000225 GO:0005515
Bisa01g3811 484 SMART arm_5 389 429 IPR000225 GO:0005515
Bisa01g3811 484 SMART arm_5 259 299 IPR000225 GO:0005515
Bisa01g3811 484 Pfam Armadillo/beta-catenin-like repeat 259 298 IPR000225 GO:0005515
Bisa01g3811 484 SUPERFAMILY ARM repeat 229 469 IPR016024 -
Bisa01g3811 484 FunFam RING-type E3 ubiquitin transferase 131 205 - -
Bisa01g3811 484 Gene3D - 328 475 IPR011989 -
Bisa01g3811 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 270 309 IPR000225 GO:0005515
Bisa01g3811 484 CDD RING-Ubox_PUB 133 185 IPR045210 -
Bisa01g3811 484 SMART Ubox_2 135 198 IPR003613 GO:0004842|GO:0016567
Bisa01g3811 484 SUPERFAMILY RING/U-box 131 207 - -
Bisa01g3811 484 ProSiteProfiles U-box domain profile. 131 205 IPR003613 GO:0004842|GO:0016567
Bisa01g3811 484 Gene3D - 229 326 IPR011989 -
Bisa01g3811 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3811 Bisa-ChrBisa01 92416161 92418769 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3811 18 477 U-box Gene Family AT3G54850 60.808 0.0 585