Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3809 ATGCCTGTCAATTTAGAGCCGTTGGATTTGGGAGTTCAGATTCCGCACCACTACAGATGCCCCATTTCCCTCGAGCTGATGCGCGACCCCGTTACAGTTTCCACTGGTCAGACTTACGATCGACCCGGAATCGAGTCATGGATAGCCGCCGGCAACACCACCTGCCCCGTCACCAGAGAGCCTCTTTCAGATTTAACTCTCATTCCGAACCACACTCTTCGCAGGCTGATACAAGAGTGGTGCGTCGCGAATGAAGCTTTCGGAGTCGAGCGGATCCCGACTCCGACCCCACCCGTCGACCCGACAACGGTCCGGACCTTGTTGAATCAGGCCTCGTTCGAGACGAGCACCTCTCAGACTCGCATCTCTGCTTTGCGTCGACTCAGAGGACTCGCTCGTGACTCGGACAAGAATCGTTCGCTCATTGGATCTTACAACGTCCGCGAGATTCTACTCCGTATCGTGTTCCGTAAGTCCGATAAGGATTGTTCCGATTTGAAGCACGAGTCTCTCGCACTTCTGGTGAATTTTCCGCTGGCCGAGTCGGAATGCGAGTGCGTGGCATCTGAACCGGAGAGAGTCAAGTATTTGTCGAGTTTGCTTTTTCATAATTCCATCGATCTCCGAGTTAACTCAGCCGAACTAATCGAGATCGTCGTTGCCGGGACTCGGTCGCCGGAGCTCCGAGCTCGGATCAGCAATGTCGATGAAATCCACGACGGAGTGCTTGACATATTGAGGAGTCCGATTTCTTATCCTCGCGCTCTCAAGATTGGGATCAAGGCCCTGTTCGCTCTGTGCCTCGTGAAACAAACACGACACAAAGCGGTCGCTGCCGGAGCTCCGGAAATCATCATGGACCGGCTCGCCGATTTCGAGAAATGCGACGCAGAGAGAGCTCTGGCAACGATCGAGTTGCTCTGTCGAATTCCGGAGGGTTGCGCCGCATTTGCAGGGCACGCCCTCACGGTGCCGCTGTTGGTGAAGAAGATACTGAAGATATCGGACCGGGCGACGGAGCACTGCGCCGGGGCGCTTCTGTCGCTATGCTCAGACTCGGAGGAGTGCCGGAGAGAGGCGGTGGCGGCGCGTGTGTTGACGCAGCTTCTATTGCTAGTACAGAGTGATTGCACGGAGAGAGCAAAGAGGAAGGCGAAGCTGTTGCTCAAGCTTCTTCGGGATTCGTGGCCGCCAGATTCCGTCGGGAACTCTGACGGCTTTACATGCAGCGAATTCGTAGCCCGGTTTTGA 1251 0.5556 MPVNLEPLDLGVQIPHHYRCPISLELMRDPVTVSTGQTYDRPGIESWIAAGNTTCPVTREPLSDLTLIPNHTLRRLIQEWCVANEAFGVERIPTPTPPVDPTTVRTLLNQASFETSTSQTRISALRRLRGLARDSDKNRSLIGSYNVREILLRIVFRKSDKDCSDLKHESLALLVNFPLAESECECVASEPERVKYLSSLLFHNSIDLRVNSAELIEIVVAGTRSPELRARISNVDEIHDGVLDILRSPISYPRALKIGIKALFALCLVKQTRHKAVAAGAPEIIMDRLADFEKCDAERALATIELLCRIPEGCAAFAGHALTVPLLVKKILKISDRATEHCAGALLSLCSDSEECRREAVAARVLTQLLLLVQSDCTERAKRKAKLLLKLLRDSWPPDSVGNSDGFTCSEFVARF 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3809 416 SUPERFAMILY RING/U-box 12 90 - -
Bisa01g3809 416 Gene3D - 86 253 IPR011989 -
Bisa01g3809 416 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
Bisa01g3809 416 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Bisa01g3809 416 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Bisa01g3809 416 Gene3D - 260 393 IPR011989 -
Bisa01g3809 416 SUPERFAMILY ARM repeat 113 392 IPR016024 -
Bisa01g3809 416 CDD RING-Ubox_PUB 15 67 IPR045210 -
Bisa01g3809 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 85 IPR013083 -
Bisa01g3809 416 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Bisa01g3809 416 FunFam U-box domain-containing protein 31 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3809 Bisa-ChrBisa01 92378632 92379882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3809 1 416 U-box Gene Family AT1G49780 67.062 0.0 532