Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3808 ATGTCTGATATCTCCGGGAAAAGCAAAGGCAAATCACCCATCAACGATAATATTCTTCCCAAATCACCCTCTTCTTTTGAAGCAGAAGAAGAGGACAGAAGCATCAACCTCAAAGGGAAGAAGAAGAAGATCAGTGTGAGTAGCAACGATGGAAAAGATGGTGATGGTGGTAAGTTTAATGACAATGAACAAGAAGGTCACATACGGAGTGAGAGAGAAAGAAGGAAGAAGATGAAGACCATGTTTGGTACCCTCCATGCTTTGCTTCCTCACCTTCCTCCTAAGGCAGACAAGTCCACCGTTGTTGAGGAAGCAGTGAAGACCATCAAAACCCTAGAGGAGACTCTGCAAAATCTCCAGAAACAAAAGGTAGAGAGGCTTCAATCTATGTGTCGTCCCTATGGCAGTAATATTTCAAGAGAGGCGTTCATGGCTGATCACCCAGCACCATTGTCTTCTGCAAATATGAATGCTTCAGCACATAATTACCCAGTAGAGTTTCAAACCTGGGTTTCTCCGAACGTGGTACTCAATGTCTGTGGGGACGAAGCTCAGTTCAGTGTGTGCTGTCCCAAGAAGCCATGCCTCTTATCCTCAATCTGCTTTGTTCTTGAGAAGTACAAGATTGAGGTTTTGTCTGCCCATATCTCCTCTGACAATAATCGATGCTCCTACATGATTCAAGCACGTGCAGACAAGTCCACCGTTGTTGATGAAGCAGTGAAGACCATCAAAACCCTTGAGCAGACCCTGCAAAATCTCCAGAAACAAAAGGTAGAGAGGCTCCAATCTATGTGTCGTCCCTATGGTAGTAATCTTTCAAGAGAGGCGTTCATGGCTGATCACCCAGCACCATTGTCTTCTGCAAATATGAATGCTTCAGCACATAATTACCCATTATAG 903 0.4441 MSDISGKSKGKSPINDNILPKSPSSFEAEEEDRSINLKGKKKKISVSSNDGKDGDGGKFNDNEQEGHIRSERERRKKMKTMFGTLHALLPHLPPKADKSTVVEEAVKTIKTLEETLQNLQKQKVERLQSMCRPYGSNISREAFMADHPAPLSSANMNASAHNYPVEFQTWVSPNVVLNVCGDEAQFSVCCPKKPCLLSSICFVLEKYKIEVLSAHISSDNNRCSYMIQARADKSTVVDEAVKTIKTLEQTLQNLQKQKVERLQSMCRPYGSNLSREAFMADHPAPLSSANMNASAHNYPL 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3808 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 129 IPR036638 GO:0046983
Bisa01g3808 300 MobiDBLite consensus disorder prediction 1 74 - -
Bisa01g3808 300 Coils Coil 237 264 - -
Bisa01g3808 300 Gene3D - 60 133 IPR036638 GO:0046983
Bisa01g3808 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 112 IPR011598 GO:0046983
Bisa01g3808 300 Pfam Helix-loop-helix DNA-binding domain 67 113 IPR011598 GO:0046983
Bisa01g3808 300 MobiDBLite consensus disorder prediction 1 22 - -
Bisa01g3808 300 ProSiteProfiles ACT domain profile. 185 264 IPR002912 -
Bisa01g3808 300 CDD bHLH_AtbHLH_like 67 120 IPR045239 -
Bisa01g3808 300 SMART finulus 202 253 IPR011598 GO:0046983
Bisa01g3808 300 SMART finulus 68 118 IPR011598 GO:0046983
Bisa01g3808 300 Coils Coil 102 129 - -
Bisa01g3808 300 CDD ACT_UUR-ACR-like 185 251 - -
Bisa01g3808 300 MobiDBLite consensus disorder prediction 25 74 - -
Bisa01g3808 300 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 230 294 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3808 Bisa-ChrBisa01 92298283 92307818 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3808 230 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 70.588 2.54e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa01g3808 HLH 3.6e-08 No_clan