LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g3805	ATGCAAGGTCATGGAAGGACTATAGGGTCTTTTCCGGCGATTGTAAGTATGATGCAGGAGCCTAGTTCTAGTGGCACCGATATGAATCAGCAGACTTCCTTGAATCACATGCAAAATGCGGTAGATGCTCGATTGTCAGATTTTATGGGATCTTCTGGTGAGACTGCATGTTTACGTGGCAGTAGTCCTAATGTTCAAAACTTTGGTGGATGGAATACTGGTGAACATAGTTCTGGCCTGAATCTCCACAGCCAAGTAAATGATGATGTTCTAAAAGCAGAAAATGGCTGGTCTTCTTCCTGTGGTGCTCCTGCTGAGGATGATCTCAGACCAGAAGAAAGGCAATTTGAATCAAGTAATGTAACTTTTCCTAGTAGCTCGAATACTAATACTAATTTGCATGGAAATCAATATAGAATCCAGCCTCTCTCCTTGCAAGGTTCCAGCTCCAATCATACAGCCCAGAATGTGACTCTAAATATGGGTCCCATTGCCAGTGCTGCTGATCGTGGGAAGAGAACTGAAGCTTGTAGTAGTGGAACTATCCAAAATAATTATGGCTTAGATAGAGAGAAGACGGCAGTCGGCAGTACTTCGTGTGACCATATAGGAACTTCATCTGGAAGCATTGGATACATGGTTGGGGGAGATAATGCTAGTTCAAGTTCTTCTTTAGTAAACTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAAAGTACTTCTGGACAACTTTCTGTTGGAGGAACCTCAAGCTCTTTTCTAGAAGCTGAAAATGGCTCCTGGCCTGCTGGGACTGCTGATCCTAATGCCTCCAGCAGATTAAATGTTTCTAGACCTTCTGAGGATATTCTTATTACTAATCCTCCAGTACAGCAGAACCCAAGAAATGAGGTGAGGCAAACAACTTCTGATGCATTCCCTTTGATAGGTGTCATGGGAAATGTGAACAGACCTATTAGAAACTTTGATAGGAGGGTGACTTATGCACACCGTCAGGAATCTAGGCATCCTAATCACTCTTCTTCCCGTCAGACACCTAGCTCTCACCCATTTAATGATTCTCTAGAATTAAGGTTAACAGCTGGAGTTACAGCAGCCAATTCTAGTTCTCCTCAGTGCCAGTCACATGCCATGCATGTAACACATCCTTTTCCTTGGAATGGCGCTGCTAGTTCAAGGGGGGGCAGTTCTTCAACTTCTTATAACCCCGCAGAAAGAGAAGTTCGGGAAGAATTAAACTTACGAATTTTACCGAGAGACAATACTGAGCACCCTACCCTTTTGCCTGCATCTTCAGGACTTGACCCTACAAGTTGGCATATGTCATCTGGAATTGTGAACAACTCTGGAGGTGTACCTCCTATGTCTTGGGTTGGATCTAGTCCAAGTGTCCACTCGGTGCCTAATCCCAGTTTGATTCTTCCTCCTGAAGTCCCAACACACAGCCAGCAAAGATTATCAGAGTTTAGTCCATGGTCATTTTTTCCATCAATGAGCTCAGTGTCTGGTGTTCATAATGGTCATTCTGCTTCTTCTTCTTCTGGTCCTCCTTCCTTTACTCATGATACAAGCAACCATCAACCATTTCCAAGATCATCATCATCAATGGAGAGAAGAGGTGATGATGTTCTTAATGCTCCTCATTCATTGCGGGCTTTAGCTGTTGACATTGAGGGGAGACGCCGACTAATATCCGAGATTCGACAAGTCTTAAATGCGATGCGAAGGGGTGAGAACTTAAGAGCTGAGGATTATTTGCTCTTTGACCCCTTCATATATCATGGTATGGCTGAAATGCATGACAGGCACAGAGACATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGCTGGCATTGGAGGAGCGCATAGGAGATGTGAACACTGGATTAAGTGAGGAGAGCATTATGAAGTTGATAAAAGTTCGAATCTTTGTATCTGTCATGACTGAGTCTTCTACAGATCTGGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGACGGAGAGGATGTGGCTACACTAGATTGTGGACATGAATTCCACACCAACTGCATCAAGCAGTGGCTAATGCAGAAGAATCTATGTCCCATTTGCAAAACAACTGCCTTAGCTCCATGA	2124	0.4397	MQGHGRTIGSFPAIVSMMQEPSSSGTDMNQQTSLNHMQNAVDARLSDFMGSSGETACLRGSSPNVQNFGGWNTGEHSSGLNLHSQVNDDVLKAENGWSSSCGAPAEDDLRPEERQFESSNVTFPSSSNTNTNLHGNQYRIQPLSLQGSSSNHTAQNVTLNMGPIASAADRGKRTEACSSGTIQNNYGLDREKTAVGSTSCDHIGTSSGSIGYMVGGDNASSSSSLVNWGSSCKRKALESTSGQLSVGGTSSSFLEAENGSWPAGTADPNASSRLNVSRPSEDILITNPPVQQNPRNEVRQTTSDAFPLIGVMGNVNRPIRNFDRRVTYAHRQESRHPNHSSSRQTPSSHPFNDSLELRLTAGVTAANSSSPQCQSHAMHVTHPFPWNGAASSRGGSSSTSYNPAEREVREELNLRILPRDNTEHPTLLPASSGLDPTSWHMSSGIVNNSGGVPPMSWVGSSPSVHSVPNPSLILPPEVPTHSQQRLSEFSPWSFFPSMSSVSGVHNGHSASSSSGPPSFTHDTSNHQPFPRSSSSMERRGDDVLNAPHSLRALAVDIEGRRRLISEIRQVLNAMRRGENLRAEDYLLFDPFIYHGMAEMHDRHRDMRLDVDNMSYEELLALEERIGDVNTGLSEESIMKLIKVRIFVSVMTESSTDLEPCCICQEEYADGEDVATLDCGHEFHTNCIKQWLMQKNLCPICKTTALAP	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g3805	707	MobiDBLite	consensus disorder prediction	339	353	-	-
	Bisa01g3805	707	MobiDBLite	consensus disorder prediction	503	541	-	-
	Bisa01g3805	707	ProSiteProfiles	Zinc finger RING-type profile.	660	701	IPR001841	-
	Bisa01g3805	707	SMART	ring_2	660	700	IPR001841	-
	Bisa01g3805	707	SUPERFAMILY	RING/U-box	659	704	-	-
	Bisa01g3805	707	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	622	705	IPR013083	-
	Bisa01g3805	707	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	228	705	IPR045191	GO:0061630
	Bisa01g3805	707	MobiDBLite	consensus disorder prediction	503	534	-	-
	Bisa01g3805	707	Pfam	Ring finger domain	660	701	IPR001841	-
	Bisa01g3805	707	MobiDBLite	consensus disorder prediction	329	353	-	-
	Bisa01g3805	707	MobiDBLite	consensus disorder prediction	116	135	-	-
	Bisa01g3805	707	FunFam	E3 ubiquitin-protein ligase MBR2	627	705	-	-
	Bisa01g3805	707	MobiDBLite	consensus disorder prediction	98	135	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g3805	Bisa-ChrBisa01	92233539	92237840	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g3805	18	705	C3H Transcription Factor Family	AT2G15530	35.609	1.25e-103	330