Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3790 ATGGAGATCGCTCATGAAACGCCGCCTCCCAACGACGATAGCGCAAACGACGCCGCCGCAGCCGCCGAGAGCCCTGTAAACTCTTCTTGTTCTTCGTTTTCTTCTTCCTGCTCCTCTTCGTCGTCGCCTCGTGGTTTGAAGGAAAAGGAGAACGAAGGGAACGCGTCCACATCAGCTAAGTACGACGATGACGACGAGGAGGAAGAGGACGTTTGTCGGATATGCCGGAACCCTGGTGACGCTGAGAATCCTCTCAGATACCCATGCGCGTGTAGCGGGAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGCCAATGCGAGGTCTGCAAACATGCCTTCTCATTCTCTCCTGTTTATGCTGAGAATGCTCCGGCTAGGCTACCTTTTCAGGAATTTGTAGTTGGAATGGCAATGAAAGCATGCCACGTTCTGCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCCTTATTATACCTTTCATCACATTTTGGATTTGGCGATTAGCTTTTGTGAGGAGCTTTGGTGAAGCCCAGAGGTTGTTCTTAAGTCATTTATCTACTGCTGTCATCCTGACTGATTGTCTGCATGGTTTCCTACTTTCTGCAAGCATTGTGTTCATTTTTCTTGGGGCCACTTCTTTGAGGGATTACTTTAGGCATTTACGAGAAATTGGAGGACAGGATGCTGACAGAGAAGATGAAGTGGACAGAAATGGCGCCCGAATTGCTAGAAGGCCTCCTGGACAAGCTAATCGGAATATTGCTGGTGATGGAAACGGTGAGGATGCTGGTGGAGCTCAAGGAATTGCCGGAGCAGGTCAGGTTATTAGAAGGAATGCAGAAAATGTTGCAGCAAGGTGGGAGATGCAAGCAGCACGACTTGAGGCTCATGTGGAACAAATGTTTGATGGTCTGGATGATGCTGATGGTGCTGAGGATGTACCCTTTGATGAACTTGTGGGCATGCAGGGTCCAGTTTTCCATCTGGTTGAAAATGCCTTTACTGTTCTGGCAAGCAATATGATTTTCCTTGGTGTTGTGATCTTTGTGCCCTTTTCATTGGGTCGTGTCATACTCCATTATCTATCTTGGTTCTTCTCAACTGCTAGTGGTCCTGTATTGTCAACTGTAATTCCACTGACAGATACAGCACTGTCTCTAGCAAATATTACATTAAAAAATGCGTTAACTGCTGTTAAAAATTTGTCATCTGATGCTCAAGAAAGTGGACTGATTGGCCAGGTTGCCGAAATGCTGAAAGTGAATGCAAGTGGATTGAGTGAAATGTCAAATAACGTTAGTGATACTGTTTCAACTGATCTCATGAAAGGAGGTTCAGTTGGAACTTCTAGACTTTCTGATGTTACCACTCTGGCTATTGGATATATGTTCATATTCACTCTACTTTTTTGCTACTTTGGCATTGTTGCTTTGATTCGATACACAAAGGGTGAGCCTTTGACAATGGGAAGGTTCTATGGCTTTGCTTCTGTAGCAGAGACAATTCCATCTCTCTTCAGGCAGTTTTTGGCAGCAATGAGGCATTTGATGACCATGGTTAAGGTTGCTTTCCTTCTAGTCATTGAACTTGGAGTATTCCCATTGATGTGTGGATGGTGGCTAGATGTTTGCACCATCAGGATGTTTGGAAAGACTATGGCTCACAGAGTTCAGTTCTTCTCTGCCTCTCCTTTGGCAAGCTCATTGGTTCATTGGGTTGTAGGGATTGTGTACATGTTACAAATTAGCATTTTTGTCAGCCTTCTTAGAGGGGTTTTGCGCAATGGAGTTTTGTACTTCCTTCGAGATCCTGCTGATCCTAACTACAACCCATTCCGTGATCTTATTGATGACCCTATGCACAAACATGCTCGCAGGGTTCTGTTATCTGTTGCAGTTTATGGAACTTTAATTGTGATGCTTGTATTTTTACCGGTTAAACTTGCTATGCGAATGGCTCCTTCCATTTTCCCACTTGACATATCGGTATCTGATCCATTCACTGAAATTCCAGCCGACATGCTTCTCTTTCAGATTTGCATCCCATTTGCTATTGAGCATTTTAAACTGAGGACGACTATTAAATCCCTTCTCCGCTACTGGTTTACAGCAGTTGGCTGGGCACTTGGTTTAACTGAATTTTTACTTCCCAGACCTGATGATAATGGTGCTCAAGAAAATGGAAATGGGGAGCCAGCCAGGCAGGATAGGCTACAGGTAGTACAAGCAGGTGTACCTGATCAGGGTATGATGGCATTTGCAGGCAACGAAGTGAACGGGGGCATTCTTGCAGCAGGAGACCTGAATGTTGGAGATGACTTTGATAATGATGAACAATCTGATTCTGATTATGGTTTTGTGCTTCGCATTGTCCTCTTGCTGGTGGTCGCTTGGATGACTCTACTTGTGTTCAACTCTGCCCTGATAGTTGTACCAATTTCACTTGGACGGGCACTTTTCAATGCCATCCCCCTTCTCCCCATTGCTCATGGCATTAAGTGCAATGATTTGTATGCTTTTATCATTGGAAGCTATGTCATCTGGACGGCTGTTGCTGGAGCTAGATACTCAATTGAGCAAATTAAAAGGAGGAGGGTTTCGGCTTTATTGAGCCAAATCTCAAAGTGGTGTGCCATCGTTATTAAGAGTTCTGCTCTTTTGTCTATATGGATATTTGTCATCCCAGTGCTAATTGGGCTTCTCTTTGAACTTTTGGTTATTGTGCCCATGAGAGTTCCGGTGGATGAAAGTCCAGTGTTCCTCCTTTATCAGGACTGGGCATTAGGTCTTATTTTCCTCAAAATATGGACTAGATTGGTTATGTTGGATCACATGATGCCCCTCGTGGATGAAAGTTGGCGAGTAAAATTTGAGAGGGTGAGAGAGGATGGCTTCTCCAGGCTGCAAGGTCTCTGGGTTTTAAGGGAGATTGTTCTTCCTATCATAATGAAACTGTTAACAGCATTGTGTGTACCTTACGTTCTTGCCAGAGGAGTGTTTCCAGTGTTTGGGTACCCCTTGGTGGTCAATTCTGCCGTATATCGGTTTGCCTGGTTGGGATGCCTCTCTTTCAGCTTTTTGTGCTTCTGTGCTAAGAGATTCCATGTCTGGTTCACAAATCTTCATAATTCAATACGTGATGACCGGTATCTGATTGGCCGGCGGCTGCATAACTTTGGAGAAGATGTTAAGGCAAATGTAGCAGGAACTTCCACTGGGTTGGAGACTTCTAATTTGCTTATACAACATGACCGTGAAGCAGATGTAGGACTACGTCTGAGGCACGCAAACCGACAGGGAGCTTGA 3342 0.4485 MEIAHETPPPNDDSANDAAAAAESPVNSSCSSFSSSCSSSSSPRGLKEKENEGNASTSAKYDDDDEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARIARRPPGQANRNIAGDGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRVILHYLSWFFSTASGPVLSTVIPLTDTALSLANITLKNALTAVKNLSSDAQESGLIGQVAEMLKVNASGLSEMSNNVSDTVSTDLMKGGSVGTSRLSDVTTLAIGYMFIFTLLFCYFGIVALIRYTKGEPLTMGRFYGFASVAETIPSLFRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKTMAHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPMHKHARRVLLSVAVYGTLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTEFLLPRPDDNGAQENGNGEPARQDRLQVVQAGVPDQGMMAFAGNEVNGGILAAGDLNVGDDFDNDEQSDSDYGFVLRIVLLLVVAWMTLLVFNSALIVVPISLGRALFNAIPLLPIAHGIKCNDLYAFIIGSYVIWTAVAGARYSIEQIKRRRVSALLSQISKWCAIVIKSSALLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWLGCLSFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNFGEDVKANVAGTSTGLETSNLLIQHDREADVGLRLRHANRQGA 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3790 1113 ProSiteProfiles Zinc finger RING-type profile. 72 119 IPR001841 -
Bisa01g3790 1113 SUPERFAMILY RING/U-box 66 122 - -
Bisa01g3790 1113 SMART ringv_2 71 119 IPR011016 GO:0008270
Bisa01g3790 1113 MobiDBLite consensus disorder prediction 21 44 - -
Bisa01g3790 1113 FunFam Probable E3 ubiquitin ligase SUD1 57 130 - -
Bisa01g3790 1113 MobiDBLite consensus disorder prediction 241 272 - -
Bisa01g3790 1113 ProSiteProfiles Zinc finger RING-CH-type profile. 64 125 IPR011016 GO:0008270
Bisa01g3790 1113 MobiDBLite consensus disorder prediction 45 60 - -
Bisa01g3790 1113 Pfam RING-variant domain 72 118 IPR011016 GO:0008270
Bisa01g3790 1113 MobiDBLite consensus disorder prediction 1 65 - -
Bisa01g3790 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 130 IPR013083 -
Bisa01g3790 1113 CDD RING_CH-C4HC3_MARCH6 71 120 - -
Bisa01g3790 1113 Coils Coil 289 309 - -
Bisa01g3790 1113 PANTHER SSM4 PROTEIN 56 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3790 Bisa-ChrBisa01 92002764 92008672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3790 8 139 C3H Transcription Factor Family AT1G50440 30.282 2.35e-06 48.1