Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3727 ATGACTGGAAATTCTGTCACTGATTTTCCTGAAACACCTCAATGTAACTCAGAAAATGGTTGTCAGACCAGAGAAGGTTCATGCCGTAAGCGAAGTACCTCAGAACAAGTTTCTGTTTGTTTATCTAATGATAAATCAATTAGCAAATGTCAGACAGCTTCCCAAAGTGTTCAAAATGAGCTGCCTGCAGCACCTCAATGTGACTCAGGAAATGGTTGTCAGGCTGGAGTAGATTCATGCCTTAGACAGTGTGCCTCAGAACAGGTTTCTGGTTGTTTATCTAATGACAAATCAGTTAGTGAATTTCAGTTGGCCTCCCAAAATATTCCAAATGAACCAGCTGCAACAACTCAATGTGACTCAGTAAATGGTTATCAGGCTGGAGAAGATTCATGCCTTAGACAAAGTGCCTCAGAACAGGTTTCTGGTTGTTTATCTAATGACAAATCAGCTAGTGAATTTCAGTTGGCCTCCCAAAATATTCCAAATGAACTAGCTGCAACAACTCAATGTGACTCAGTAAATGGTTATCAGGCTGAAGAAGATTCATGCCTTAAACAAAGTGCCTCAGAACAGGTTTCTGGTTGTCTAGCTAATGGCAAATCAATTAGTGAATTTCAGTCGGCCTCCCAAAAGATTCCAAATGAACCAGCTGCAACAACTCAATGTGACTCAGGAAACGGCTGTCAGACTGGAGAAGGTTCATGCCTTAAACAAAGTGCCTCAGAACAAGTTTCTGGTTGTTTAGCTACTGATAAATCAATTAATAACTGTCAGCTAGCCTCCCAAAATATTCAAAATAAACTCGATGCATCGCCACAATGTGTCTCAGGGAATGGTTGTCAGACCAGAGAAGGATCTTGCCTTAAACAAAGTGCGGCAGAACAAGTTTCTGGTTGTTTTTATAATGATAAATCAATTAATGAATTTCAGCTGACCTCCCTTAATGTTCAAAATGAACCGGCTGTGACAACTCAATGTGATTCCAGAAATGGTTGTCAGACAGGAAAAGGTTCGTGCCTTAAACAAAGTGCCTCAGAACAAGTTTCTAGTTTCTCAGCTATCGATAAAACAACTAAAGAATTTCAGCCAGCCTCCCAAAATATTCAAAATGAACTGGCTGCGACACCTCAATGTGACTCAGGAAATGCTCGTCAGACTGGAGAAGGTTCATGCCCTGAACAAAGTGCCTCAGAACAAGATTCTGGTTGTTTATTTAACAATAAATCAATTAACAAATTTCAGCCAGACTCCCAAAATATTCAAAATGATCCTGTTGAAGTAAATGCTGCTATTATCAACATTCTTGATAAAGATCAAATGCAACCAGTTCCTGCTCAAGTGACCATGAGTACTGGGAATGAACAACTAGATCCACGTTCTGGAGATGTTGCCAAAAGTTCTAGTTTTGACTGTTTTGAAAGAAAGCCGAAAAAGGAAACTCATGCTCGGGCAGGGCATAGGAAAAAATTGACATCAAAATCATTGAAGAAGAAATACATGCTAAGGTCATTAGGTAGCAATGACAGAGCTTTGCGATCAAAGACACAAGAAAAAACCAAAGCACCTGAATCAAATACTAATTTGGTTAATGCTAGAAATGATGGAGAGAAGAGCAGCAGAGGGAGGAAGAAGAAGAAGAAAAAGAGCCAGGGAGAAGGAGGGGCTGATGAATTTTCGAGAATCAAAGCTCATCTAAAGTATTTACTAAACCGAGTGAGTTATGAGCAAAGCTTGATCGATGCTTATTCTGGTGAGGGCTGGAAAGGAAACAGCATGGATAAACTAAAGCCAGAGAAGGAGCTTCAACGGGCCAAGTCTGAAATACTTAGGCGGAAATTAAAAATTAGAGATTTGTTTCAACATCTGGATACATTGTGTGCCGAAGGAAAGCTTCCAGAATCTCTGTTTGATTCTGAAGGAGAGATTGACAGCGAAGACATATTCTGTGCAAAATGTGGGTCCAAGGACTTGACCACTGAGAACGATATAATACTCTGTGATGGTTCTTGTGACCGTGGATTTCACCAGTTCTGTTTGGAACCTCCATTGTTAACTGAAAACATTCCACCTGACAATGAGAGTTGGCTATGCCCTGGATGTGATTGCAAAGATGACTGTATTGAACTTCTTAATGAATCATTTGGGACGAGTCTCTCTATTAGTGACACTTGGGAGAGGATTTTTCCTGAAGCAGCTGCAGCTGCTGGAAATAATGTGGGACTTCCTTCAGAGGATTCAGACGATGATGATGATGACTATAATCCCGATATTCCTGAAGATAAGGAGATGAAAAGAGATGAATCAAATTCTGATGAATCTGAATATGCTTCTGCTTCTGAAAAATTGGATGATCAACGCAAGGGGGATCAGTACTTAGGCCTTCCTTCTGATGATTCAGAGGATGATGATTTTGATCCGAATTCTCCAGATCTTGACAAAAAAGTCACAGAAGAAAGTTCAAGCAGTGATTTCACCTCTGATTCTGAGGATCTTGAAGCTACAATAAAGGATAGCATGTTGTCTGGACAGGATGAAGATCCTGTGTCTGCCTCCTCGGATGTTGTTAAGCAGTTTAAAGGTTCTGGCAGACAAAGATGTGGTAAGAGGCAATCCCTAGCTGATGAACTGTCATCTTTACTAGAGTCAGATCAAGGCCAAGAGGGTCCTGCTCCTGTTTCCGGGAAAAGACAAGTGGAAAGGTTGGACTACAAAAAGCTATATGATGAGACATACAAAAACATGGAGTCTGATACTAATGATGGCGATGAAGATTGGACTGACACTGCTACCGCAAGTAGAAGAAAGAAACTCTCCAGCAAAGTGACTCCAGCATCATCTAATGGAAAAGCCTTAAGAGAGGACCACGTACAAGATAAAAGTCCACGTACTCCTAAGAGAAATACTAGTCAGAATAAAGTTGAGAATACGCATGATACACCACTTGAAGGCTCTAGGAAATCCAGTTCTAGTGATATAAAACCTGGATCTTCAACTTACAAGAGGCTTGGGGAAGCTGTAGTTCAGAGACTTAACAAATCCTTTGAAGAAAATCAGTATCCAAACCGAGCAACAAAAGAAAACTTGGCACAAGAACTTGGACTCACTTTCCAGCAGGTTGACAAATGGTTTGGGAATACTAGATGGAGCTTTCGGCATCCGTCGCATACGAAAGCGGCCACAAATAGGAATGATGCTTCAGAGCAGGCTACTTGCAGCCAAGCTGAAAATCAGGAATCACTTGTTGAGGATAAGGGGAACTGTGGAGAAAAATCAAAATCCTTGAGCTGTAGAAAGAGGAAGTGTGAGTCAGATCCTGAGGCATCTGATGCAAATTTTGATGTCGATAGTGCCGCAGCACAGCCTCAGGCAGGATCATCAGGGGCTCAAAAAGGGCAAAGAGGTCACAAAATGAGGAAGAGAAGATAA 3429 0.4109 MTGNSVTDFPETPQCNSENGCQTREGSCRKRSTSEQVSVCLSNDKSISKCQTASQSVQNELPAAPQCDSGNGCQAGVDSCLRQCASEQVSGCLSNDKSVSEFQLASQNIPNEPAATTQCDSVNGYQAGEDSCLRQSASEQVSGCLSNDKSASEFQLASQNIPNELAATTQCDSVNGYQAEEDSCLKQSASEQVSGCLANGKSISEFQSASQKIPNEPAATTQCDSGNGCQTGEGSCLKQSASEQVSGCLATDKSINNCQLASQNIQNKLDASPQCVSGNGCQTREGSCLKQSAAEQVSGCFYNDKSINEFQLTSLNVQNEPAVTTQCDSRNGCQTGKGSCLKQSASEQVSSFSAIDKTTKEFQPASQNIQNELAATPQCDSGNARQTGEGSCPEQSASEQDSGCLFNNKSINKFQPDSQNIQNDPVEVNAAIINILDKDQMQPVPAQVTMSTGNEQLDPRSGDVAKSSSFDCFERKPKKETHARAGHRKKLTSKSLKKKYMLRSLGSNDRALRSKTQEKTKAPESNTNLVNARNDGEKSSRGRKKKKKKSQGEGGADEFSRIKAHLKYLLNRVSYEQSLIDAYSGEGWKGNSMDKLKPEKELQRAKSEILRRKLKIRDLFQHLDTLCAEGKLPESLFDSEGEIDSEDIFCAKCGSKDLTTENDIILCDGSCDRGFHQFCLEPPLLTENIPPDNESWLCPGCDCKDDCIELLNESFGTSLSISDTWERIFPEAAAAAGNNVGLPSEDSDDDDDDYNPDIPEDKEMKRDESNSDESEYASASEKLDDQRKGDQYLGLPSDDSEDDDFDPNSPDLDKKVTEESSSSDFTSDSEDLEATIKDSMLSGQDEDPVSASSDVVKQFKGSGRQRCGKRQSLADELSSLLESDQGQEGPAPVSGKRQVERLDYKKLYDETYKNMESDTNDGDEDWTDTATASRRKKLSSKVTPASSNGKALREDHVQDKSPRTPKRNTSQNKVENTHDTPLEGSRKSSSSDIKPGSSTYKRLGEAVVQRLNKSFEENQYPNRATKENLAQELGLTFQQVDKWFGNTRWSFRHPSHTKAATNRNDASEQATCSQAENQESLVEDKGNCGEKSKSLSCRKRKCESDPEASDANFDVDSAAAQPQAGSSGAQKGQRGHKMRKRR 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3727 1142 SUPERFAMILY FYVE/PHD zinc finger 639 707 IPR011011 -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 736 1005 - -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 845 859 - -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 1 34 - -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 378 403 - -
Bisa01g3727 1142 SMART HOX_1 996 1058 IPR001356 GO:0003677
Bisa01g3727 1142 ProSitePatterns Zinc finger PHD-type signature. 650 701 IPR019786 -
Bisa01g3727 1142 CDD homeodomain 1008 1055 IPR001356 GO:0003677
Bisa01g3727 1142 Pfam Homeodomain 1005 1050 IPR001356 GO:0003677
Bisa01g3727 1142 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 375 1112 - -
Bisa01g3727 1142 SUPERFAMILY Homeodomain-like 996 1055 IPR009057 -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 521 535 - -
Bisa01g3727 1142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 702 IPR013083 -
Bisa01g3727 1142 SMART PHD_3 649 702 IPR001965 -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 1 23 - -
Bisa01g3727 1142 ProSiteProfiles Zinc finger PHD-type profile. 647 704 IPR019787 -
Bisa01g3727 1142 Gene3D - 997 1067 - -
Bisa01g3727 1142 ProSiteProfiles 'Homeobox' domain profile. 1008 1054 IPR001356 GO:0003677
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 1076 1142 - -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 898 920 - -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 964 997 - -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 1083 1108 - -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 452 556 - -
Bisa01g3727 1142 Pfam PHD-finger 649 704 IPR019787 -
Bisa01g3727 1142 CDD PHD_PRHA_like 649 701 IPR045876 -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 758 795 - -
Bisa01g3727 1142 MobiDBLite consensus disorder prediction 481 497 - -
Bisa01g3727 1142 FunFam Homeobox protein HAT3.1 630 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3727 Bisa-ChrBisa01 89541707 89548672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3727 542 1051 Homeobox Transcription Factor Family AT3G19510 49.722 2.54e-138 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Bisa01g3727 PHD 1.4e-10 CL0390