Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3670 ATGGGTGCTCCTAAACAGAAATGGACACCAGAAGAAGAAGCGGCCCTTAAAGCTGGAGTTGTTAAGCATGGGGCTGGAAAATGGCGCACAATACTCAAGGATCCAGAATTTAGTAGGGTATTGTACCTGCGGTCAAATGTAGATCTGAAGGATAAATGGAGAAACATGACTGTGATGACAAATGGGTGGAATTCAAGGGACAAGTCTAGGTTAGCAATTCGAAGGGTGCAACAGTTCCCAAGACAGGAGGAGAATTCCATGGTTCTTACTCCTTTTGTTCTGAGTGATGAAGAAATTGTGGATTTTAGGCCTCAAGTTTCTAGAGATATGGCACACATTCCTGGTCCAAAGAGATTGGATAGCCGTATAATGGAAGCAATAACTAACTTGAAGGAGCCTGGTGGTTCAAATAAGACAACTATTGCAGCATACATAGAGGACCAATATTGGGGACCTTCAGACTTCAAAAGGATATTGTCAGCAAAATTGAAATATTTGACAGCGAGTGGGAAATTGATGAAGGTCAAACGCAAGTATAGGGTTGCACCTACTCTGGTGTATTCTGACAGAAGAAGAAAACCATCCATACTATTGGATGGAAGGCAGGCATTCCCTATAAAATTTGATAAGGATGAGGCTAGTGTCCTTACAAAGTCTCAGATAGATTTAGAATTAGCAAAGATGAGGTCTATGACTTCTCAAGAGGCAGCTGCAGTCGCTGCTCGGGCAGTTACAGAAGCAGAAGCTGCCATGGCAGAAGCTGAAGAAGCAGCAAGAGAGGCAGAGGCTGCAGAAGCTGATGCAGAGGCAGCTCAAGCTTTTGCAGAAGCTGCCATGAAAACACTAAAAGGGAGAAACGCATCAAATATGTTCTTGGAAGTTGACTCTTTTGGTGGAAATACTGAAACAAAGGATATAAAAATATGA 927 0.4272 MGAPKQKWTPEEEAALKAGVVKHGAGKWRTILKDPEFSRVLYLRSNVDLKDKWRNMTVMTNGWNSRDKSRLAIRRVQQFPRQEENSMVLTPFVLSDEEIVDFRPQVSRDMAHIPGPKRLDSRIMEAITNLKEPGGSNKTTIAAYIEDQYWGPSDFKRILSAKLKYLTASGKLMKVKRKYRVAPTLVYSDRRRKPSILLDGRQAFPIKFDKDEASVLTKSQIDLELAKMRSMTSQEAAAVAARAVTEAEAAMAEAEEAAREAEAAEADAEAAQAFAEAAMKTLKGRNASNMFLEVDSFGGNTETKDIKI 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3670 308 SMART sant 4 59 IPR001005 -
Bisa01g3670 308 PANTHER SINGLE MYB HISTONE 4 1 287 IPR044597 GO:0003691
Bisa01g3670 308 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Bisa01g3670 308 CDD SANT_TRF 6 57 - -
Bisa01g3670 308 Gene3D - 2 59 - -
Bisa01g3670 308 Gene3D - 116 189 IPR036388 -
Bisa01g3670 308 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Bisa01g3670 308 FunFam Telomere repeat-binding factor 1 2 58 - -
Bisa01g3670 308 Pfam linker histone H1 and H5 family 123 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa01g3670 308 FunFam Telomere repeat-binding factor 1 115 193 - -
Bisa01g3670 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Bisa01g3670 308 SUPERFAMILY "Winged helix" DNA-binding domain 118 193 IPR036390 -
Bisa01g3670 308 FunFam Telomere repeat-binding factor 1 8 86 - -
Bisa01g3670 308 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Bisa01g3670 308 Coils Coil 237 274 - -
Bisa01g3670 308 SMART h15plus2 115 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa01g3670 308 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 114 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3670 Bisa-ChrBisa01 88336634 88340506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3670 1 292 Single Myb Histone (SMH) Gene Family AT1G49950 66.225 6.21e-101 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa01g3670 Linker_histone 2.3e-08 CL0123