Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3666 ATGTCGTCACGACGTCACGCTCTCGGCGTTGCCGTAACGAAATCGTTCACCTCGTTATGTTATAAAAGCAGCCTCAGCCCTCAAATAGCCCCGTTGCTCCGCTTTTCGACTTTGTTACGCTTCGTCTCAAAGAAAGCCTCAGAAAACTCCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCGGACACCATCGACAACGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCAGACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTCGAAGACGGTCGTACTCTTGCCGACTACAACATACAGAAGGAGTCCACCCTTCACCTTGTCCTTCGTCTGCGTGGTGGCATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTCGAGAGCTCAGACACGATTGACAATGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGACCAGCAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAAGATGGACGAACCTTGGCTGATTACAACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTGCGTGGTGGCATGCAGATATTCGTGAAGACCCTTACAGGGAAGACCATCACTCTTGAGGTTGAGAGCTCCGACACGATTGACAATGTCAAGGCAAAGATTCAAGACAAAGAGGGTATTCCACCAGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAAGACGGACGAACCTTGGCCGATTACAACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTGCGTGGTGGCATGCAGATTTTCGTGAAGACCCTTACAGGGAAGACCATCACTCTTGAGGTTGAGAGCTCCGACACTATTGACAATGTCAAGGCAAAAATTCAAGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAAGATGGACGCACTCTCGCGGACTACAATATTCAGAAGGAGTCTACTCTCCACCTTGTCCTTCGTCTTAGGGGAGGAATGCAAATTTTTGTGAAGACCTTGACTGGAAAGACCATTACTCTTGAGGTCGAGAGCTCGGACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAGGGGATTCCGCCCGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGTTGGAAGACGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTTCGTGGCGGAAACTAG 1302 0.5031 MSSRRHALGVAVTKSFTSLCYKSSLSPQIAPLLRFSTLLRFVSKKASENSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3666 433 ProSiteProfiles Ubiquitin domain profile. 205 280 IPR000626 GO:0005515
Bisa01g3666 433 PANTHER UBIQUITIN 205 282 - -
Bisa01g3666 433 ProSitePatterns Ubiquitin domain signature. 79 104 IPR019954 -
Bisa01g3666 433 ProSiteProfiles Ubiquitin domain profile. 129 204 IPR000626 GO:0005515
Bisa01g3666 433 ProSiteProfiles Ubiquitin domain profile. 357 432 IPR000626 GO:0005515
Bisa01g3666 433 SUPERFAMILY Ubiquitin-like 127 204 IPR029071 -
Bisa01g3666 433 Pfam Ubiquitin family 207 278 IPR000626 GO:0005515
Bisa01g3666 433 Pfam Ubiquitin family 359 430 IPR000626 GO:0005515
Bisa01g3666 433 Pfam Ubiquitin family 55 126 IPR000626 GO:0005515
Bisa01g3666 433 Pfam Ubiquitin family 131 202 IPR000626 GO:0005515
Bisa01g3666 433 Pfam Ubiquitin family 283 354 IPR000626 GO:0005515
Bisa01g3666 433 ProSiteProfiles Ubiquitin domain profile. 281 356 IPR000626 GO:0005515
Bisa01g3666 433 FunFam Polyubiquitin 3 129 204 - -
Bisa01g3666 433 FunFam Polyubiquitin 3 357 432 - -
Bisa01g3666 433 SUPERFAMILY Ubiquitin-like 52 128 IPR029071 -
Bisa01g3666 433 SUPERFAMILY Ubiquitin-like 356 432 IPR029071 -
Bisa01g3666 433 ProSiteProfiles Ubiquitin domain profile. 53 128 IPR000626 GO:0005515
Bisa01g3666 433 SUPERFAMILY Ubiquitin-like 204 280 IPR029071 -
Bisa01g3666 433 SMART ubq_7 129 200 IPR000626 GO:0005515
Bisa01g3666 433 SMART ubq_7 205 276 IPR000626 GO:0005515
Bisa01g3666 433 SMART ubq_7 281 352 IPR000626 GO:0005515
Bisa01g3666 433 SMART ubq_7 357 428 IPR000626 GO:0005515
Bisa01g3666 433 SMART ubq_7 53 124 IPR000626 GO:0005515
Bisa01g3666 433 CDD Ubl_ubiquitin 129 204 - -
Bisa01g3666 433 FunFam Polyubiquitin 3 53 128 - -
Bisa01g3666 433 ProSitePatterns Ubiquitin domain signature. 307 332 IPR019954 -
Bisa01g3666 433 Gene3D - 357 433 - -
Bisa01g3666 433 Gene3D - 205 280 - -
Bisa01g3666 433 Gene3D - 129 204 - -
Bisa01g3666 433 Gene3D - 45 128 - -
Bisa01g3666 433 Gene3D - 281 356 - -
Bisa01g3666 433 CDD Ubl_ubiquitin 281 356 - -
Bisa01g3666 433 CDD Ubl_ubiquitin 357 432 - -
Bisa01g3666 433 ProSitePatterns Ubiquitin domain signature. 383 408 IPR019954 -
Bisa01g3666 433 ProSitePatterns Ubiquitin domain signature. 155 180 IPR019954 -
Bisa01g3666 433 FunFam Polyubiquitin 3 205 280 - -
Bisa01g3666 433 SUPERFAMILY Ubiquitin-like 280 356 IPR029071 -
Bisa01g3666 433 CDD Ubl_ubiquitin 53 128 - -
Bisa01g3666 433 ProSitePatterns Ubiquitin domain signature. 231 256 IPR019954 -
Bisa01g3666 433 CDD Ubl_ubiquitin 205 280 - -
Bisa01g3666 433 FunFam Polyubiquitin 3 281 356 - -
Bisa01g3666 433 PRINTS Ubiquitin signature 63 83 IPR019956 -
Bisa01g3666 433 PRINTS Ubiquitin signature 84 104 IPR019956 -
Bisa01g3666 433 PRINTS Ubiquitin signature 105 126 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3666 Bisa-ChrBisa01 88191213 88193406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3666 357 432 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 3.83e-47 156