Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3638 ATGAGTGGCCACATCGGCTTATGTAAGAAACCCAGTTTCGAGGGAGTTTGTCTGGATCATTCCGACATGAATACAAAGGAAGTGTCTGTTGATTTCATTTCAGACATGTCATCGAGCTTGAGTCCACAACCGGCGAGGCGGAGTAGGGGTCGCCAAAAGATTGAGATGAAGAAGATGAGCAATGAGAGCAATTTACAGGTCACTTTTTCCAAACGTCGGACCGGGCTTTTCAAGAAGGCTAGTGAGCTTTGCACCCTTTGTGGGGCTGAGGTCGCCCTCATCGTCTTCTCGCCGGGCGAGAAGGCCTTCTCATTCGGTCACCCGAACGTCGAGGCCGTCGTGGAGAGGTATCTCAACGGCGGCGCACCCCTGCCGCGGACGACCTCTATGCAGATCATGGAGGCCCACCGCAACGCCAATGTGCGTGAGCTCAACGCGCAGCTCACGCAGGTGATGGCTCAGCTGGAGGCCGAGAAGAAGCGCGGCGAGGAGCTGAACAAAAAGAGGAAGGAGATGGAGGAACGGTGCTGGTGGGCTGGACCGTATGATGCTCTCACTAGGGAGCAACTCGTGACAGTGAAGACGCGTCTGGAGGAGATGAAGAGATTCATCACGCGCGAAACTGATCGTGCCCTAATTCAGATGGCTGCAAATAATACTAGCAAGCCGCCGCATCGGTTCTATGCCGGCAGCTCGTCATCCTGCCCAGCGCCACCGCTGCAACAGCCACAGATGCAGGTGGGAGCACCACCACTGCCAGCTCAGGTGTTTGCTCCGCCACAGCCTCCGATGATTCAGAATCCGGTGTTTGACGGAAGCATGCTGCTGCCGCCGTCGCTGCCGCCGCACAGCGGGTTCGGGCCGTTTGACAACAAAATGGGAGGTCATAATGACAATAGAAACAAACTGAAACCAATAAATGATAAAAGGGTTTTGACTTTTTTGGCTGCTGTATTGGGTGGCTATGGCAGAGTGAAGTTTCTCAGATATTTGTCTTGTCCTTCTGGAGCTCAGTTTGTGACAACCATAGTAACACAACATTCTCAGATTGTTGGTGCAGTTTGA 1065 0.5343 MSGHIGLCKKPSFEGVCLDHSDMNTKEVSVDFISDMSSSLSPQPARRSRGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCGAEVALIVFSPGEKAFSFGHPNVEAVVERYLNGGAPLPRTTSMQIMEAHRNANVRELNAQLTQVMAQLEAEKKRGEELNKKRKEMEERCWWAGPYDALTREQLVTVKTRLEEMKRFITRETDRALIQMAANNTSKPPHRFYAGSSSSCPAPPLQQPQMQVGAPPLPAQVFAPPQPPMIQNPVFDGSMLLPPSLPPHSGFGPFDNKMGGHNDNRNKLKPINDKRVLTFLAAVLGGYGRVKFLRYLSCPSGAQFVTTIVTQHSQIVGAV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3638 354 PRINTS MADS domain signature 86 107 IPR002100 GO:0003677|GO:0046983
Bisa01g3638 354 PRINTS MADS domain signature 71 86 IPR002100 GO:0003677|GO:0046983
Bisa01g3638 354 PRINTS MADS domain signature 51 71 IPR002100 GO:0003677|GO:0046983
Bisa01g3638 354 ProSiteProfiles MADS-box domain profile. 49 109 IPR002100 GO:0003677|GO:0046983
Bisa01g3638 354 CDD MADS_MEF2_like 50 120 IPR033896 GO:0000977|GO:0045944
Bisa01g3638 354 Gene3D - 128 221 - -
Bisa01g3638 354 FunFam Agamous-like MADS-box protein AGL62 61 126 - -
Bisa01g3638 354 PANTHER MADS BOX PROTEIN 51 204 - -
Bisa01g3638 354 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 58 105 IPR002100 GO:0003677|GO:0046983
Bisa01g3638 354 Coils Coil 138 175 - -
Bisa01g3638 354 Gene3D - 61 126 IPR036879 GO:0003677|GO:0046983
Bisa01g3638 354 SUPERFAMILY SRF-like 50 123 IPR036879 GO:0003677|GO:0046983
Bisa01g3638 354 SMART madsneu2 49 108 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3638 Bisa-ChrBisa01 87419576 87422232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3638 45 237 Type I MADS-box Gene Family AT5G60440 53.061 5.56e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa01g3638 SRF-TF 6e-24 No_clan