Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3635 ATGGTGAAGAGAAAGTCTAGCTCGGGTCGCCAAAAAATTCCCATTGAAAAAATACCAAAAAAAAGTCATTTACAAGTGACGTTCTCAAAGCGTCGTTCAGGGCTATTCAAGAAAGCCAGTGAGCTTTGCACACTCTGCGGCGTGGAGATAGCAATAATAGTCTTCTCTCCCGCTGACAAGGCCTTCTCCTTCGGCCACCCTGAAGTAGAATCCATCGTCGATCGCTATCTTTCTCGAAACCCTGTACCAGAATCTGGGGCCCACCAGCTCGTCGAGGCTCACCGGAATGCCAACGTTCGCGACCTCAACATGCAGCTGACGCAGCTTCTGAGCCAACTGGAGATGGAGAGGAAACGAGGAGAAGAGTTAGACCAGGTGAGGAAAGCGAGGCAGAGACAATACTGGTGGGAGAACCCTATTGAAGAATTAGGGTTTCATGAGTTACAACAGTTGATAATTGTAATGGAGGAACTGAAGAAGAATGTGGGGAAATTGGGTAGCAAGATGTTGATGGATCATACTAGCTTGTCTAATAACTCTCCAATGATGGGAGCTCATGGAGTACTTGGACGCTATGATACCTTTGAGTTTGACACCAAACCTGCTGTTATGAATATGAATATGAATATTTCCAGTGCTGCTTCTAATCTTCCTCATCATGCCTATGATAATCTCAACTGTAGGCATGGATATCTATGA 699 0.4549 MVKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIVDRYLSRNPVPESGAHQLVEAHRNANVRDLNMQLTQLLSQLEMERKRGEELDQVRKARQRQYWWENPIEELGFHELQQLIIVMEELKKNVGKLGSKMLMDHTSLSNNSPMMGAHGVLGRYDTFEFDTKPAVMNMNMNISSAASNLPHHAYDNLNCRHGYL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3635 232 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Bisa01g3635 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Bisa01g3635 232 Gene3D - 88 179 - -
Bisa01g3635 232 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Bisa01g3635 232 PANTHER MADS BOX PROTEIN 10 163 - -
Bisa01g3635 232 Coils Coil 96 123 - -
Bisa01g3635 232 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Bisa01g3635 232 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Bisa01g3635 232 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Bisa01g3635 232 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Bisa01g3635 232 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Bisa01g3635 232 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Bisa01g3635 232 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3635 Bisa-ChrBisa01 87297711 87298409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3635 5 170 Type I MADS-box Gene Family AT5G60440 53.846 7.84e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa01g3635 SRF-TF 2.9e-23 No_clan