Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3607 ATGGATTGGTTTATTAAGCCTCAAGGGCCCTTATTGCTTCGCATTTCAATTTCACTACGCTTCGTCTCAGAGAAAGCTTACGAAAACTCCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCTGACACCATCGACAACGTTAAGGCCAAGATTCAAGATAAGGAGGGCATTCCACCAGACCAGCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTTGCCGATTACAACATCCAAAAGGAATCCACTCTCCACCTTGTCCTCCGTCTCCGTGGTGGGATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTCGAGGTCGAGAGCTCTGACACCATCGATAACGTTAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTCGAAGACGGTCGTACTCTTGCCGACTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTTCGTCTGCGTGGTGGCATGCAAATCTTTGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGAGCTCAGACACCATTGACAATGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGACCAGCAGAGGCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGACGCACTCTTGCGGACTACAACATCCAGAAGGAGTCAACCCTTCACTTGGTCTTGCGTCTCCGTGGTGGTATGCAGATTTTCGTGAAGACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGAGCTCCGACACCATTGACAATGTTAAGGCAAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTCGAAGACGGACGCACCCTTGCGGACTACAACATTCAGAAGGAGTCTACTCTCCACCTTGTCCTTCGTCTTAGGGGAGGAATGCAAATTTTTGTGAAAACCCTGACAGGGAAGACCATCACTCTTGAGGTCGAGAGCTCCGACACCATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCGCCTGACCAGCAGAGGCTGATCTTTGCCGGGAAGCAGTTGGAGGACGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGTCTTCGTGGCGGAAACTAA 1242 0.5161 MDWFIKPQGPLLLRISISLRFVSEKAYENSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3607 413 CDD Ubl_ubiquitin 337 412 - -
Bisa01g3607 413 FunFam Polyubiquitin 3 109 184 - -
Bisa01g3607 413 FunFam Polyubiquitin 3 337 412 - -
Bisa01g3607 413 SUPERFAMILY Ubiquitin-like 260 336 IPR029071 -
Bisa01g3607 413 SUPERFAMILY Ubiquitin-like 32 108 IPR029071 -
Bisa01g3607 413 Pfam Ubiquitin family 187 258 IPR000626 GO:0005515
Bisa01g3607 413 Pfam Ubiquitin family 35 106 IPR000626 GO:0005515
Bisa01g3607 413 Pfam Ubiquitin family 339 410 IPR000626 GO:0005515
Bisa01g3607 413 Pfam Ubiquitin family 263 334 IPR000626 GO:0005515
Bisa01g3607 413 Pfam Ubiquitin family 111 182 IPR000626 GO:0005515
Bisa01g3607 413 ProSitePatterns Ubiquitin domain signature. 211 236 IPR019954 -
Bisa01g3607 413 ProSiteProfiles Ubiquitin domain profile. 337 412 IPR000626 GO:0005515
Bisa01g3607 413 Gene3D - 337 413 - -
Bisa01g3607 413 Gene3D - 261 336 - -
Bisa01g3607 413 Gene3D - 109 184 - -
Bisa01g3607 413 Gene3D - 25 108 - -
Bisa01g3607 413 Gene3D - 185 260 - -
Bisa01g3607 413 SMART ubq_7 185 256 IPR000626 GO:0005515
Bisa01g3607 413 SMART ubq_7 261 332 IPR000626 GO:0005515
Bisa01g3607 413 SMART ubq_7 337 408 IPR000626 GO:0005515
Bisa01g3607 413 SMART ubq_7 33 104 IPR000626 GO:0005515
Bisa01g3607 413 SMART ubq_7 109 180 IPR000626 GO:0005515
Bisa01g3607 413 FunFam Polyubiquitin 3 185 260 - -
Bisa01g3607 413 CDD Ubl_ubiquitin 33 108 - -
Bisa01g3607 413 ProSitePatterns Ubiquitin domain signature. 287 312 IPR019954 -
Bisa01g3607 413 ProSiteProfiles Ubiquitin domain profile. 109 184 IPR000626 GO:0005515
Bisa01g3607 413 FunFam Polyubiquitin 3 261 336 - -
Bisa01g3607 413 ProSitePatterns Ubiquitin domain signature. 59 84 IPR019954 -
Bisa01g3607 413 ProSiteProfiles Ubiquitin domain profile. 33 108 IPR000626 GO:0005515
Bisa01g3607 413 CDD Ubl_ubiquitin 185 260 - -
Bisa01g3607 413 SUPERFAMILY Ubiquitin-like 108 184 IPR029071 -
Bisa01g3607 413 ProSiteProfiles Ubiquitin domain profile. 261 336 IPR000626 GO:0005515
Bisa01g3607 413 ProSiteProfiles Ubiquitin domain profile. 185 260 IPR000626 GO:0005515
Bisa01g3607 413 ProSitePatterns Ubiquitin domain signature. 135 160 IPR019954 -
Bisa01g3607 413 SUPERFAMILY Ubiquitin-like 335 412 IPR029071 -
Bisa01g3607 413 SUPERFAMILY Ubiquitin-like 184 260 IPR029071 -
Bisa01g3607 413 PANTHER UBIQUITIN 185 262 - -
Bisa01g3607 413 CDD Ubl_ubiquitin 109 184 - -
Bisa01g3607 413 PRINTS Ubiquitin signature 43 63 IPR019956 -
Bisa01g3607 413 PRINTS Ubiquitin signature 85 106 IPR019956 -
Bisa01g3607 413 PRINTS Ubiquitin signature 64 84 IPR019956 -
Bisa01g3607 413 ProSitePatterns Ubiquitin domain signature. 363 388 IPR019954 -
Bisa01g3607 413 FunFam Polyubiquitin 3 33 108 - -
Bisa01g3607 413 CDD Ubl_ubiquitin 261 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3607 Bisa-ChrBisa01 85684015 85686455 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3607 337 412 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 3.53e-47 156