Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3588 ATGCAATACCACATGATGATCCAAGATTCCCACACCTGTACTCATGTCCATGCTATTGATGATGAACGAAGAGGGTTAGGGTTTGGGTCTCACCTTCTCCCTTTAAAGCTCTTACCAACGCACATTTTTGTTCTCTCTTTCTCGTTCACTCTCTCTCTCTCTCTCTCTAGGGTTCCAGATTCCTTGCCAAAGATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCTAATCAGCAATACCAGCAGCAGCAACCCTACATGATGATGCCGCCGCACGCCCAGGCTCCACCGATGTGGGCTCCATCAGCCCAGCCCCCGCCGCAGCAGTCGGTGCCTCCGCCGCAACCTACCCAACACGTCCAGCCGACCAGCGCCGATGAGGTCCGTACCCTCTGGATCGGGGATTTGCAGTACTGGATGGACGAGAACTATCTGTACACTTGCTTTGCTCCCACGGGCGAGGTGGCCTCTGTGAAGGTCATTCGGAATAAGCAAACTAATCAGTCTGAAGGTTATGGGTTTATTGAATTTTTCACTCGTGCTGCTGCGGAGAGGGTTCTTCAAACCTATAATGGTGCAATCATGCAGAATGGTGGGCAAACCTACAGATTGAACTGGGCAACCTTTAGTGCGGGTGAGAGGCGTCATGATGACTCTCCAGATTACACAATATTTGTTGGAGACTTGGCTGCAGATGTTACTGATTACATGCTGCAGGAGACATTCAGGTCTCGATATCCCTCAGTTAAAGGTGCCAAAGTTGTGATTGATAGGCTCACTGGCCGGACAAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAGTGAACAAATGCAAGCTATGACTGAGATGCAAGGGGTTCTATGTTCAACAAGACCCATGCGAATTGGACCAGCCACAAATAAAAACCTTGGGGGACAGCAAAAAACTTCCTATCAGAATCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATCTGGATCCTAATGTTACAGACGACCATCTGAGGCAAGTTTTTGGCCAGTATGGAGAGTTAATTCATGTGAAGATTCCGGCAGGAAAGAGATGTGGATTTGTCCAATTTGCTGACAGGAGCTGTGCAGAAGAGGCTCTACGGATGTTAAATGGTACGCTGTTGGGTGGACAAAATGTCCGTCTTTCATGGGGCCGTAGTCCTTCAAACAAGCAGGCCCAGCCAGATCCAAACCAGTATGGTGGATATTATGGATATGCTCAGGGGTATGAAAATTATGGATATCCTCCTGCTGCTTCACAGGACCCCAACATGTATGGCAGCTATCCAGGGTATGCCAATTACCAACCACCACAGCAACAGCAGCAAATGGGATATAGTTAA 1395 0.4832 MQYHMMIQDSHTCTHVHAIDDERRGLGFGSHLLPLKLLPTHIFVLSFSFTLSLSLSRVPDSLPKMMQPGPGMAPPNMGQQPNQQYQQQQPYMMMPPHAQAPPMWAPSAQPPPQQSVPPPQPTQHVQPTSADEVRTLWIGDLQYWMDENYLYTCFAPTGEVASVKVIRNKQTNQSEGYGFIEFFTRAAAERVLQTYNGAIMQNGGQTYRLNWATFSAGERRHDDSPDYTIFVGDLAADVTDYMLQETFRSRYPSVKGAKVVIDRLTGRTKGYGFVKFGDESEQMQAMTEMQGVLCSTRPMRIGPATNKNLGGQQKTSYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELIHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQYGGYYGYAQGYENYGYPPAASQDPNMYGSYPGYANYQPPQQQQQMGYS 464
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3588 464 MobiDBLite consensus disorder prediction 443 464 - -
Bisa01g3588 464 SMART rrm1_1 333 400 IPR000504 GO:0003723
Bisa01g3588 464 SMART rrm1_1 228 302 IPR000504 GO:0003723
Bisa01g3588 464 SMART rrm1_1 135 210 IPR000504 GO:0003723
Bisa01g3588 464 SUPERFAMILY RNA-binding domain, RBD 317 430 IPR035979 GO:0003676
Bisa01g3588 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 214 IPR000504 GO:0003723
Bisa01g3588 464 SUPERFAMILY RNA-binding domain, RBD 112 213 IPR035979 GO:0003676
Bisa01g3588 464 MobiDBLite consensus disorder prediction 64 129 - -
Bisa01g3588 464 MobiDBLite consensus disorder prediction 301 333 - -
Bisa01g3588 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 332 404 IPR000504 GO:0003723
Bisa01g3588 464 MobiDBLite consensus disorder prediction 95 124 - -
Bisa01g3588 464 Gene3D - 226 302 IPR012677 -
Bisa01g3588 464 FunFam Polyadenylate-binding protein RBP45C 219 310 - -
Bisa01g3588 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 292 IPR000504 GO:0003723
Bisa01g3588 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 334 397 IPR000504 GO:0003723
Bisa01g3588 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 200 IPR000504 GO:0003723
Bisa01g3588 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 306 IPR000504 GO:0003723
Bisa01g3588 464 MobiDBLite consensus disorder prediction 306 333 - -
Bisa01g3588 464 Gene3D - 309 413 IPR012677 -
Bisa01g3588 464 Gene3D - 72 221 IPR012677 -
Bisa01g3588 464 SUPERFAMILY RNA-binding domain, RBD 221 322 IPR035979 GO:0003676
Bisa01g3588 464 MobiDBLite consensus disorder prediction 76 93 - -
Bisa01g3588 464 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 124 417 - -
Bisa01g3588 464 CDD RRM1_SECp43_like 135 215 - -
Bisa01g3588 464 FunFam Polyadenylate-binding protein RBP45 74 218 - -
Bisa01g3588 464 CDD RRM2_SECp43_like 226 305 - -
Bisa01g3588 464 MobiDBLite consensus disorder prediction 450 464 - -
Bisa01g3588 464 FunFam Polyadenylate-binding protein RBP45C 311 434 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bisa01g3588 Bisa-ChrBisa01 85100763 85108516 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3588 228 421 Eukaryotic Initiation Factors Gene Family AT2G23350 23.618 7.58e-10 59.3