Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3535 ATGGACTGGACCCGGGGTCCCACCATTGGCCGTGGCTCCACGGCCACCGTCTACCTAGCCAAGGCCCGCCCGCCTGCCGCTCACTTGTTCGCCGTCAAGTCCGCCAAGCTCCACCAATCGGAGCCCCTCAGGAAAGAACAGAGGATACTCTCAACATTACTGATGTGTCCTCAGATTGTAGCATACAAAGGTTGTGACGTTACATTAGAAAATGGGGTTCTGTTTTACAATTTGTTCATGGAGTATGCACCTCATGGGACCCTCGCCGACGCCGCTCGCCGGAGAGGCGGGCTAGATGAGGTGGTGGTTCGGACGTATGCGCGTCAAATCCTGCTTGGGTTGAACCATCTTCATTCTAATGGCATAGTGCATTGTGATATTAAAGGTAAAAACGTGTTGGTCACGGAGGATGGGGCTAAAATTGCTGATTTAGGCTGTGCACGGGAGGTCGCGGATTTTGGCGGAGTGATCACGGGCACGCCGGCGTTCATGGCGCCGGAGGTGGGGCGTGGGGAGCAACAGGGGTTCCCTGCCGATGTGTGGTCTCTGGGGTGCACTGTGTTGGAGATGATCACCGGGCGGGCTCCATGGCCCGAATTGTCTGACCCGATAAGTGCGGTTTATCGGATTGGGTTCTCCGATGACGCGCCGGAAATATCGGGTTTAATGTCGGAAGAGGGGAGGGACTTTGTGAGCAAGTGTTTGAAGAGAGACCCGAATGAGCGGTGGTCGGTGTGTGAGCTTCTCAGGCATGGATTTGTCGAAGAATCAACTTTGATAACGAAGGAATGTGAAAGTTCAAGTTCGGATACTCCGACTAGTGTCATGGATCAAACCGTTTGGAAGTCGTTCCAGACAACCCAGGATCCGACCGGGGAGTGTTCCTGGAATTCTGCTAGACATAGGATTCGCAGGTTGTTCGGAAATTCTACGACGTCGTTTAGACCCAGTTGGGAAATTGACGAAAATGAAAATTGGGTCACGGTGAGAGGCAGTACGATAATAGAGTGTGATGTAAAAACAGAGACTTGTGGACCGGATATTGTGTATATTAACGTTAGAAAGCAGGAAAGTTCTGTACTTTCTGATGAACCCAGAACACTAACTTCCATTGGATTATGTTATAGTAAAGGAGGATTAGATTTGGATTACTCTTGTTCATGTGTAATGATTAATGTTATAATGGTTTCACATGTGCCCAATATAATGATTAAGTTGGCAAAATTGATTTCATATTATATGATCATTGCTTGGGAAAACTATGATCACTTTGGAGAATTGCAAGCAGATGTTCTCTCCTTTTTGGCCATAGTCTAA 1317 0.4867 MDWTRGPTIGRGSTATVYLAKARPPAAHLFAVKSAKLHQSEPLRKEQRILSTLLMCPQIVAYKGCDVTLENGVLFYNLFMEYAPHGTLADAARRRGGLDEVVVRTYARQILLGLNHLHSNGIVHCDIKGKNVLVTEDGAKIADLGCAREVADFGGVITGTPAFMAPEVGRGEQQGFPADVWSLGCTVLEMITGRAPWPELSDPISAVYRIGFSDDAPEISGLMSEEGRDFVSKCLKRDPNERWSVCELLRHGFVEESTLITKECESSSSDTPTSVMDQTVWKSFQTTQDPTGECSWNSARHRIRRLFGNSTTSFRPSWEIDENENWVTVRGSTIIECDVKTETCGPDIVYINVRKQESSVLSDEPRTLTSIGLCYSKGGLDLDYSCSCVMINVIMVSHVPNIMIKLAKLISYYMIIAWENYDHFGELQADVLSFLAIV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3535 438 Gene3D Transferase(Phosphotransferase) domain 1 2 310 - -
Bisa01g3535 438 CDD STKc_MAPKKK 2 254 - -
Bisa01g3535 438 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g3535 438 ProSiteProfiles Protein kinase domain profile. 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g3535 438 SMART serkin_6 3 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa01g3535 438 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 306 - -
Bisa01g3535 438 SUPERFAMILY Protein kinase-like (PK-like) 3 288 IPR011009 -
Bisa01g3535 438 ProSitePatterns Protein kinases ATP-binding region signature. 9 33 IPR017441 GO:0005524
Bisa01g3535 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3535 Bisa-ChrBisa01 84045156 84046569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3535 2 344 MAP Kinase Kinase Kinase AT5G55090 45.730 2.62e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Bisa01g3535 Pkinase 1.3e-50 CL0016