LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa01g3523	ATGACCACAAAACCAAACACGAAATTCTTGGTTTCTCTTTTCGTTCTGCTTTCGATTCTCAAAGCCGAAGCTAATTGCAGATCTGGTTGCAAGCTTGCTTTGGCTTCGTATTACGTTTGGGAAGGCTCAAATCTCACATTCATTAGCGATATCTTCGGCCAGGATATTTCTGAGATTCTCAAATACAATCCGAGTGTTCCTAACAAGGATTATGTTCAGAGCCAGACCCGAATCAACGTGCCTTTCACGTGCGAGTGCTTGAACGGCGTCTTCTTAGGTCACACTTTCTCTTACACATTCCAACCCGCTGATACGTACCGTAGAATCGCTCAGATCGCTTTCTCTAACCTTACGACCGAGGATTGGATGCGGAGAGTGAACGTCTATCCAGATACGCAGATTCCGGACGACGTTCAGATCAACGTCACCGTCAATTGCTCCTGCGGCGACAGGCACGTCTCGAGGGATTACGGTCTGTTCTTGACGTACCCGCTTCAGCCCGGTGAGAACTTGTCGGAGGTTGCGACGGCGAACGGTGTGCCAGCGGAGGTGATACGGATGTACAACCCGACTTCCGATTTCAGCGGTGGTAGTGGGCTAGTGTTCGTGCCGGCCAAAGATGATAAAGGAAGCTTTTTACCATTGAAACTGAAGTCTGGTGAGTGGACATTCTTGCATGGCTGCTCCATGAATGTTTTTACATGAATATCAAAAGGAGGCATTGCTGGAATAATATGTGTTGGAGCTGTTGGTGGAGCCTCAATATTGGGAGTGATTATGTACATTGCTTTATATAGAAGAAAGAAAGTGGGTGAGGCTTCCTTTCTCCCACCACCATCTGAAGATCAATTCCTTCAATTTGGACATGGCAGTGGAAGAAGCATGAAGAAGGGTTCAGAATCAATGGATGAAGCTTCTCCAAGAATGACAGGAATCACAGTGGACAAGTCTGTAGAGTTCTCATATGAGGAGCTCTCCAAAGCCACCAATGACTTTTCTCTGTCTCATAAGATCGGCCAAGGTGGCTTTGGATCTGTCTACTACGCTCACCTTCGAGATGAGAAAGCTGCAATTAAGAAGATGGATATGCAAGCGTCAAAGGAATTTCTTGCTGAACTCAAGGTTCTCACTCACGTCCACCACTTGAACTTGGTACGCTTAATAGGATATTGTGTTGAGAGCTCCTTATTCTTGGTGTACGAATACATTGAGAATGGCAATTTAAGCCAGCATCTACGTGGGGGCTCAGGAAGAGAACCACTATCATGGTCAGCTAGGGTTCAAATCGCCCTAGATGCAGCAAGAGGACTTGAATACATCCATGAACACACTGTTCCTGTCTACATTCATCGTGACATTAAATCCCCAAACATTTTGATCGACAAGAACTTTCGAGGCAAGGTTGCAGATTTTGGTATGACAAAACTTACGGAATATGGAAGCAGTTCATTTCAAACACGACTTGTTGGTACATTTGGCTATATGCCACCAGAGTATGCGCAATACGGTGACGTTTCGCCCAAAGTAGATGTATATGCGTTTGGAGTAGTTCTCTATGAACTCGTATCCGCCAAGGAAGCTATTGTGAAGGCAAACGACCCTGTGAATGAATCCATGGGACTTTTTGAAGAGGTTCTAAAGCGGCCAGATCAGAAAGATGAACTTCGCAAACTTGTTGACCCAAGGCTTGCTGACGACTACCCTCTTGATTCAGTATACAAGATGTGTCAACTAGCGAAAGCATGCACACATGATAATCCTCAACTAAGGCCAAGCATGAGATCCATTGTGGTTGCATTAATGACACTTTCTTCTTCCTCTGAGGATTGGGATGTTGGCTCCTTCTATGAACACCAAGCCATCATGCATCTTATGCCTGGAAGATAA	1887	0.4536	MTTKPNTKFLVSLFVLLSILKAEANCRSGCKLALASYYVWEGSNLTFISDIFGQDISEILKYNPSVPNKDYVQSQTRINVPFTCECLNGVFLGHTFSYTFQPADTYRRIAQIAFSNLTTEDWMRRVNVYPDTQIPDDVQINVTVNCSCGDRHVSRDYGLFLTYPLQPGENLSEVATANGVPAEVIRMYNPTSDFSGGSGLVFVPAKDDKGSFLPLKLKSGEWTFLHGCSMNVFTXISKGGIAGIICVGAVGGASILGVIMYIALYRRKKVGEASFLPPPSEDQFLQFGHGSGRSMKKGSESMDEASPRMTGITVDKSVEFSYEELSKATNDFSLSHKIGQGGFGSVYYAHLRDEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVESSLFLVYEYIENGNLSQHLRGGSGREPLSWSARVQIALDAARGLEYIHEHTVPVYIHRDIKSPNILIDKNFRGKVADFGMTKLTEYGSSSFQTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELVSAKEAIVKANDPVNESMGLFEEVLKRPDQKDELRKLVDPRLADDYPLDSVYKMCQLAKACTHDNPQLRPSMRSIVVALMTLSSSSEDWDVGSFYEHQAIMHLMPGR	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa01g3523	628	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	448	460	IPR008271	GO:0004672\|GO:0006468
	Bisa01g3523	628	Pfam	Protein tyrosine and serine/threonine kinase	333	599	IPR001245	GO:0004672\|GO:0006468
	Bisa01g3523	628	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	10	614	IPR044812	GO:0019199\|GO:0045087
	Bisa01g3523	628	SUPERFAMILY	Protein kinase-like (PK-like)	311	600	IPR011009	-
	Bisa01g3523	628	SMART	serkin_6	332	602	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g3523	628	FunFam	LysM receptor kinase 2	311	402	-	-
	Bisa01g3523	628	ProSiteProfiles	Protein kinase domain profile.	332	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa01g3523	628	FunFam	PTI1-like tyrosine-protein kinase 3	403	614	-	-
	Bisa01g3523	628	CDD	STKc_IRAK	338	597	-	-
	Bisa01g3523	628	Gene3D	Transferase(Phosphotransferase) domain 1	403	619	-	-
	Bisa01g3523	628	Gene3D	Phosphorylase Kinase; domain 1	317	402	-	-
	Bisa01g3523	628	ProSitePatterns	Protein kinases ATP-binding region signature.	338	360	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa01g3523	Bisa-ChrBisa01	83836390	83849266	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa01g3523	4	628	Receptor kinase-like Gene Family	AT3G21630	53.521	0.0	658

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Bisa01g3523		PK_Tyr_Ser-Thr	1.5e-45	CL0016