Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3517 ATGCAAGAGGACAAAAAAAACAGGCCCCTGAAGAGTTGCGAAAAAGTAGAAAACAAACAAACGTACAAAGGTCAAGGCATTAGATTATGGCTATTGATTGGGTTTCCGATTTCACATTCCCGCCATTACCGGAGCTCCGACCCCTCTCTCATGGCGAAAACGAGACCGGGAAGGAAGGACCTCGATTCTTATACCATTAGAGGCACGAATAAGATCGTCAGAGCTGGAGACTGTGTGTTGATGCGACCTTCCGACACCAGCAAGCCTCCTTACGTGGCGCGAGTGGAGAAGATCGAGCAGGACAACAGGAATAACGTTAAAGTCCGCGTGAGGTGGTATTATCGGCCGGAGGAGTCGATTGGGGGACGCAGACAGTTCCATGGAGCGAAAGAGCTGTTTTTGTCTGACCATTATGATGTTCAGAGTGCTCATACCATTGAAGGGAAGTGTATTGTGCATTCTTTCAAGAACTACACAAAGCTTGAAAATGTAGGGGCTGAAGATTACTATTGTAGATTCGAGTACAAGGCTGCTACTGGGGCATTCACCCCTGACCGCGTTGCTGTATATTGCAAATGCGAGATGCCTTATAACCCGGATGACCTCATGGTACAATGTGAGGGATGCAAGGATTGGTACCATCCTGCTTGTGTGGGCATGACTATTGAAGAAGCAAAGAAACTAGACCATTTTGTATGTTCTGAATGTTCATCTGATGATGATATGAAAAAGCCCCAAGCCACATTTCCTGTGTCTCCAGCAGATGATGGCAAGGTGGAGCCCAAGCGGAGGAAAAGATGA 801 0.4707 MQEDKKNRPLKSCEKVENKQTYKGQGIRLWLLIGFPISHSRHYRSSDPSLMAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQATFPVSPADDGKVEPKRRKR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3517 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 249 IPR013083 -
Bisa01g3517 266 SMART PHD_3 190 237 IPR001965 -
Bisa01g3517 266 ProSiteProfiles Zinc finger PHD-type profile. 188 239 IPR019787 -
Bisa01g3517 266 FunFam Chromatin remodeling protein EBS 44 182 - -
Bisa01g3517 266 Gene3D - 39 182 IPR043151 -
Bisa01g3517 266 ProSiteProfiles BAH domain profile. 71 186 IPR001025 GO:0003682
Bisa01g3517 266 FunFam Bromo-adjacent homology (BAH) domain-containing protein 183 254 - -
Bisa01g3517 266 MobiDBLite consensus disorder prediction 237 266 - -
Bisa01g3517 266 ProSitePatterns Zinc finger PHD-type signature. 191 236 IPR019786 -
Bisa01g3517 266 SMART BAH_4 71 186 IPR001025 GO:0003682
Bisa01g3517 266 CDD BAH_BAHCC1 72 206 - -
Bisa01g3517 266 PANTHER OS08G0421900 PROTEIN 51 258 - -
Bisa01g3517 266 Pfam BAH domain 73 185 IPR001025 GO:0003682
Bisa01g3517 266 SUPERFAMILY FYVE/PHD zinc finger 182 241 IPR011011 -
Bisa01g3517 266 Pfam PHD-finger 190 238 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3517 Bisa-ChrBisa01 83746425 83750632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3517 81 182 Core DNA Replication Machinery Family AT4G14700 29.126 5.34e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa01g3517 BAH 4.4e-24 No_clan