Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3516 ATGGAAGGTAGTAATAGTAGTTGTAATGGGAGTTCATGTGTGATGGGGTTTGGAGAGAACAGTGGTGGAAGTGGAAGTGGTGGGGGGTTATGTGCTACAAATCCAATGATGATGATGATGCCTTTAGTCACTACTTGTCATCATAGTGCACATCATCCCATCAATCCTAATCCCAATCCTAATCTCGTTATTAACTCTAATCATCCCCATAATAATGCACCTACACACGCACACACAACTATTACTAATCACCACAACGCCTTCACCAACACAAATACTACTACTTCTTCTGGCTTACCCTCCTTTTTCATGGACGATCCTTCCTCTTCTTCTGCTAAAGCCAAGATCATGGCTCATCCTCACTATCATCGCCTCCTCGCAGCCTACGTCAATTGTCAAAAGGTAGGGGCGCCGCCGGAGGCGGTGGTGAGGTTGGAGGAGGCTTGTGCAACGGCGGCGACAATGGCCGCCGGGAGCGGCGGCGGTGGGTCGGGGTATATTGGAGAAGATCCGGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTTACAAAGTATGAGCAAGAGCTCTCGAAACCCTTCAAGGAAGCTATGCACTTCCTTCATACTATCGAGTCTCAGTTCAAATCTCTCACTATCTCTTCTTCTTCAGACTTCGTTTGTAATGAGGCAGCCGATAGGAACGGATCATCCGAGGAAGATGTTGATGTGCCCAACAACATTATCGATCCATTGGCAGAGGACCGGGAACTGAAGGGCCAGCTTCTGCGCAAGTACAGCGGATACCTCGGCAGCCTTAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTGCCCAAGGAAGCAAGGCAACAGCTTCTTGATTGGTGGAGCAGACATTATAAATGGCCATACCCATCGGAGTCACAGAAGCTGGCACTTGCGGAATCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTCATCAACCAAAGGAAGCGTCACTGGAAGCCCTCAGAGGACATGCAGTTCATGGTGGTGGATCCATCTCATCCTCATCATCACTATTACATGGACACTGTTCTCGGCAATCCCTATCCCATGATCTGA 1098 0.4863 MEGSNSSCNGSSCVMGFGENSGGSGSGGGLCATNPMMMMMPLVTTCHHSAHHPINPNPNPNLVINSNHPHNNAPTHAHTTITNHHNAFTNTNTTTSSGLPSFFMDDPSSSSAKAKIMAHPHYHRLLAAYVNCQKVGAPPEAVVRLEEACATAATMAAGSGGGGSGYIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMHFLHTIESQFKSLTISSSSDFVCNEAADRNGSSEEDVDVPNNIIDPLAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHHYYMDTVLGNPYPMI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3516 365 ProSitePatterns 'Homeobox' domain signature. 309 332 IPR017970 GO:0000981|GO:0006355
Bisa01g3516 365 ProSiteProfiles ELK domain profile. 251 271 IPR005539 GO:0003677
Bisa01g3516 365 Pfam KNOX2 domain 167 213 IPR005541 GO:0003677|GO:0005634
Bisa01g3516 365 Gene3D - 276 338 - -
Bisa01g3516 365 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 340 - -
Bisa01g3516 365 ProSiteProfiles 'Homeobox' domain profile. 271 334 IPR001356 GO:0003677
Bisa01g3516 365 CDD homeodomain 283 335 IPR001356 GO:0003677
Bisa01g3516 365 SUPERFAMILY Homeodomain-like 273 350 IPR009057 -
Bisa01g3516 365 SMART KNOX1_2 110 154 IPR005540 GO:0003677|GO:0005634
Bisa01g3516 365 Pfam ELK domain 251 272 IPR005539 GO:0003677
Bisa01g3516 365 SMART KNOX2_2 163 214 IPR005541 GO:0003677|GO:0005634
Bisa01g3516 365 SMART HOX_1 273 338 IPR001356 GO:0003677
Bisa01g3516 365 FunFam Homeobox protein knotted-1-like 2 276 338 - -
Bisa01g3516 365 Pfam KNOX1 domain 113 150 IPR005540 GO:0003677|GO:0005634
Bisa01g3516 365 SMART ELK_2 251 272 IPR005539 GO:0003677
Bisa01g3516 365 Pfam Homeobox KN domain 291 330 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3516 Bisa-ChrBisa01 83666208 83672203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3516 112 364 Homeobox Transcription Factor Family AT1G62360 80.156 2.84e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa01g3516 KNOX2 4.2e-22 No_clan