Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa01g3345 ATGGAAAGCGCAGCGCCATCTTCTTCAACAGTTTCAAGAACTGCTCTTCTCATTCTGAGGATTCTTACCTTTGTGTTCCTTCTTATTGCTCTCATTCTCGTTGCCGTCAACAAGCAAACTGAAACAGTAGATGGAGATGAAACCAAAGTCAAGTTCAGTGACGTTATTTCCTATCGGTATATGATGGCAACAATAGTGATAGGGTTTGTATATAGCCTCATTCAAACGATACTCTCAGTCCTCAATGTGATCTCAGGAACCCGCCTCATAAGCGGTGATTTTGGCTATCTGCTTGACTTCTATGGCGACAAGATAATATCATACCTATTAGCGACGGGGGCTGCAGCAGGATACGGTGCAACCCAAGATATGCGTAGAGTGGTCAACAACTTCGACGACTTCTTCGACATGGCCAATGCTTCTGCCAGCCTTCTCCTTCTTGCATTTCTCTTCACCGCCATAGCTTCTGTTTTCACTTCCTATGCATTGCCCAAAAAAAGTCTCTTCTCCTCAACCCTCTCTCTCGCTCGCCTTCTCCATTTCCTTCCTTTCTCCTCTCGGCAATTCAAAGGTAGTCGAAGATGGCAGAAGGTGAGGAAGTCCAACCCCTTGTCTGTGACAACGGAACAGGAATGGTTAAGATTACTAATTGCTGGATTTGCAGGAGATGATGCCCCCCGTGCTGTGTTCCCTAGTATTGTTGGTCGTCCCCGTCACACAGGAGTGATGGTTGGGATGGGCCAGAAAGATGCATATATTGGTGACGAGGCACAGTCTAAGCGTGGTATTTTGACTCTTAAGTATCCTATTGAGCATGGAATTGTGAACAATTGGGATGATATGGAAAAGATCTGGCATCACACCTTCTATAACGAGCTTCGTGTTGAACCAGAAGAGCACCCAGTTTTGCTAACTGAGGCTCCTCTTAATCCCAAGGCCAATCGTGAGAAGATGACTCAAATTATGTTTGAGACATTTAATGCCCCTGCTATGTATGTTGCCATTCAAGCTGTTCTGTCACTCTATGCAAGTGGTCGCACAACTGGTATTGTGTTAGACGCCGGTGATGGTGTGAGCCATACAGTCCCTATCTATGAGGGTTATGCTCTCCCACACGCCATCCTTCGTCTTAACCTAGCAGGCCGAGACCTCACTGAATACTTGATGAAAATCCTCACTGAACGTGGGTACTCATTCACTACCTCGGCTGAGCGTGAAATTGTGAGGGACGTAAAGGAGAAGCTAGCCTACATTGCCCTTGACTACGAGCAAGAGCTGGAGGCTGCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCAGATGGTCAGGTCATCACCATTGGCGCTGAGCGTTTCAGATGTCCAGAAGTTCTATTCCAGCCATCCTTCATCGGGATGGAAGCAGCAGGCATTCATGAGACAACATACAACTCCATCATGAAGTGCGATGTTGATATTAGGAAAGACCTGTATGGAAATGTTGTCCTCTCTGGAGGCTCAACCATGTTTGGGGGCATTGCTGATAGGATGAGTAAGGAGATCTCTGCATTAGCCCCAAGCAGCATGAAGATCAAGGTGGTGGCACCACCCGAGAGAAAGTATAGTGTCTGGATTGGTGGTTCTATCTTGGCCTCTCTCAGCACCTTTCAGCAGATGTGGATTGCAAAGGCAGAGTACGATGAGTCTGGACCATCAATTGTACATAGAAAATGCTTCTAA 1725 0.4684 MESAAPSSSTVSRTALLILRILTFVFLLIALILVAVNKQTETVDGDETKVKFSDVISYRYMMATIVIGFVYSLIQTILSVLNVISGTRLISGDFGYLLDFYGDKIISYLLATGAAAGYGATQDMRRVVNNFDDFFDMANASASLLLLAFLFTAIASVFTSYALPKKSLFSSTLSLARLLHFLPFSSRQFKGSRRWQKVRKSNPLSVTTEQEWLRLLIAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYIGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVEPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDAGDGVSHTVPIYEGYALPHAILRLNLAGRDLTEYLMKILTERGYSFTTSAEREIVRDVKEKLAYIALDYEQELEAAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGSTMFGGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa01g3345 574 PRINTS Actin signature 435 451 IPR004000 -
Bisa01g3345 574 PRINTS Actin signature 225 234 IPR004000 -
Bisa01g3345 574 PRINTS Actin signature 248 259 IPR004000 -
Bisa01g3345 574 PRINTS Actin signature 260 282 IPR004000 -
Bisa01g3345 574 PRINTS Actin signature 314 327 IPR004000 -
Bisa01g3345 574 PRINTS Actin signature 339 358 IPR004000 -
Bisa01g3345 574 SUPERFAMILY Actin-like ATPase domain 217 352 IPR043129 -
Bisa01g3345 574 SUPERFAMILY Actin-like ATPase domain 346 574 IPR043129 -
Bisa01g3345 574 SMART actin_3 213 574 IPR004000 -
Bisa01g3345 574 Pfam Casparian strip membrane protein domain 12 151 IPR006702 -
Bisa01g3345 574 Pfam Actin 217 574 IPR004000 -
Bisa01g3345 574 Gene3D Actin; Chain A, domain 4 379 470 - -
Bisa01g3345 574 ProSitePatterns Actins signature 1. 252 262 IPR004001 -
Bisa01g3345 574 ProSitePatterns Actins signature 2. 555 563 IPR004001 -
Bisa01g3345 574 FunFam Actin, muscle 379 470 - -
Bisa01g3345 574 PANTHER ACTIN 218 567 IPR004000 -
Bisa01g3345 574 ProSitePatterns Actins and actin-related proteins signature. 303 315 IPR020902 -
Bisa01g3345 574 FunFam Actin, alpha skeletal muscle 528 574 - -
Bisa01g3345 574 Gene3D - 218 568 - -
Bisa01g3345 574 Gene3D - 337 537 - -
Bisa01g3345 574 FunFam Actin, alpha skeletal muscle 454 527 - -
Bisa01g3345 574 FunFam Actin, alpha skeletal muscle 206 356 - -
Bisa01g3345 574 CDD NBD_sugar-kinase_HSP70_actin 273 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa01g3345 Bisa-ChrBisa01 78313499 78327931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa01g3345 215 574 Cytoskeleton Gene Families AT3G12110 94.167 0.0 723